Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23660 455 / 1e-159 ATPPT1 polyprenyltransferase 1 (.1.2.3) AT3G51820 42 / 0.0005 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001531 [exp] 358 / 6e-124 AT4G23660 183 / 3e-55 polyprenyltransferase 1 (.1.2.3) Lus10043358 [exp] 44 / 0.0002 AT2G44520 501 / 6e-177 cytochrome c oxidase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093700 [exp] 484 / 2e-171 AT4G23660 432 / 8e-151 polyprenyltransferase 1 (.1.2.3) Potri.005G093600 [exp] 432 / 3e-151 AT4G23660 413 / 2e-143 polyprenyltransferase 1 (.1.2.3) Potri.002G216100 [exp] 42 / 0.0005 AT2G44520 488 / 2e-171 cytochrome c oxidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10033224 pacid=23172117 polypeptide=Lus10033224 locus=Lus10033224.g ID=Lus10033224.BGIv1.0 annot-version=v1.0 ATGGCGTCGTATCTCATACGCATCGCCTCCCGGAGATCCCCCGGCGGTGGTTACCTTCCACGGCACGCCCTATGTTCTTCCTTTCCCCTGCTTCAAGTCT CCTCCGTCGACTCATCGACCACCGGAAGTCCGAAGCCTGATTTCTCCCGTCCTTCGTTCCTCCACTTTGTACACTTCTCCTTCCTCTCTCGGGGTCCCCG TTTCCATCCGAGTACGGAAGGCTTGAATTTGAGGTTCGTGGATAGATTTTCGACGCTACCGAGCCAGGAGGAGAATCAGGGCAGTACACAGGTTCTTACG AAGGCAGACTTGTCGTGGATAGATCTATACTTGCCTGTATATTTACGGTCTTACGCTAAGCTTGCCCGTCTTGATAAACCCATTGGGACTTGGCTACTTG CCTGGCCTTGTATGTGGTCCATTTCATTGGCAGCTTCACCAGGGCATCTGCCTGATTTCAAGATGATGGCTTTGTTTGGTTGCGGGGCGTTCCTTTTACG AGGAGCTGGTTGCACCATTAATGACCTTCTCGACAGGGATATTGACACAAAGGTGGAGCGCACAAGGTTGAGACCGATTGCTAGTGGTCATTTGACTCCA TTTCATGGGCTATGTTTCCTTGGCTCTCAGTTGCTTTTGGGTCTTGGAATTCTCCTTCAACTGAACGATTTTAGCAAGATTCTGGGAGCTTCATCATTGT TACTGGTTTTTTCCTATCCTCTCATGAAGAGATTCACCTTTTGGCCTCAAGCCTATCTAGGTTTAACGTTTAACTGGGGAGCTTTGTTAGGTTGGTCTGC AATAAGAGGAAGTCTGGATCCGGCTATTGTGGTACCATTGTATATGAGTGGGGTATTTTGGACCCTCGTTTATGATACTATTTATGCACATCAGGATAAG GAAGATGATCTGAAAGTGGGCGTTAAATCTACAGCGTTGAGATTCGGGGATTCAACAAAGCTATGGATAGGTGGATTTGGAATTGCATGCATTAGCAGCC TTGGTGCCAGCGGATATAATGCTGATCTTGGATGGCCATTTTATGCAAGTTTACTAGCAGCATCGGGACAACTAGCTTGGCAGATCCAGACGGTTGACTT ATCAAGTAGAGCTGATTGCAATAGGAAATTTGTGTCAAACAAGTGGTTTGGCGGAATAGTCTTCAGTGGGGCTTTGCTGGGTAGACTCCTGCAATAG
AA sequence Show only first row Show all	>Lus10033224 pacid=23172117 polypeptide=Lus10033224 locus=Lus10033224.g ID=Lus10033224.BGIv1.0 annot-version=v1.0 MASYLIRIASRRSPGGGYLPRHALCSSFPLLQVSSVDSSTTGSPKPDFSRPSFLHFVHFSFLSRGPRFHPSTEGLNLRFVDRFSTLPSQEENQGSTQVLT KADLSWIDLYLPVYLRSYAKLARLDKPIGTWLLAWPCMWSISLAASPGHLPDFKMMALFGCGAFLLRGAGCTINDLLDRDIDTKVERTRLRPIASGHLTP FHGLCFLGSQLLLGLGILLQLNDFSKILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWSAIRGSLDPAIVVPLYMSGVFWTLVYDTIYAHQDK EDDLKVGVKSTALRFGDSTKLWIGGFGIACISSLGASGYNADLGWPFYASLLAASGQLAWQIQTVDLSSRADCNRKFVSNKWFGGIVFSGALLGRLLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	0	1
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10034062 [exp]	3.6	0.8439
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	6.0	0.8368
AT3G01130			unknown protein		Lus10042059 [exp]	7.7	0.8615
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	10.2	0.8639
AT2G46850			Protein kinase superfamily pro...		Lus10030181 [exp]	10.5	0.8477
AT3G47630			unknown protein		Lus10023590 [exp]	11.7	0.8336
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	15.0	0.8418
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	18.0	0.8565
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	18.3	0.8443
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	22.7	0.8443

Compare expression of checked genes

Lus10033224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.