Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41990 578 / 0 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 528 / 0 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT1G49160 507 / 7e-175 WNK7 Protein kinase superfamily protein (.1.2) AT3G18750 505 / 5e-174 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G48260 431 / 7e-146 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 427 / 2e-143 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G04910 430 / 7e-143 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 413 / 4e-139 WNK9 Protein kinase superfamily protein (.1.2) AT3G51630 411 / 2e-137 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 387 / 7e-128 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000334 [exp] 1065 / 0 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 776 / 0 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10017318 [exp] 729 / 0 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 553 / 0 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 509 / 1e-172 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10041947 [exp] 446 / 1e-150 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 447 / 8e-146 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10010547 [exp] 422 / 4e-140 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 420 / 2e-139 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145300 [exp] 663 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 637 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.014G101500 [exp] 544 / 0 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.008G037200 [exp] 526 / 0 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 519 / 8e-178 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G084600 [exp] 452 / 4e-153 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 452 / 5e-153 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.010G087900 [exp] 448 / 3e-149 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 444 / 8e-148 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 439 / 7e-146 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033225 pacid=23172077 polypeptide=Lus10033225 locus=Lus10033225.g ID=Lus10033225.BGIv1.0 annot-version=v1.0 ATGGGGGATCCTGTTTCTTTTGACGATTGTGAGGTTGTGGAAAAAGATCCGTCATGTCGTTATATTCGGTATGATGAGATCTTGGGCAGAGGGGCATTCA AGACTGTATATAAGGCATTTGATGAGGTTGACGGAATTGAAGTTGCTTGGAACCAAATGAACGTTGAAGATGCATTACAGACACCAGAACAGTTGGAGAG GCTATATTCAGAGGTTCATCTGTTGAAGTCGCTGAAGCATGAAAATATCATCAAGTGTTACCACTCTTGGGTGGATGACAAGACTAGAACCATTAACATG ATAACAGAGCTGTTCACTTCTGGCTGTTTAAGGCAGTATCGCAAGAAGCATAATAATGTTGATTTGAAGGCTATCAAAAACTGGGCTAGGCAGATCCTGA AAGGGCTGAACTATTTGCACAGTCATAATCCTCCTATCATTCATCGGGATTTGAAATGTGACAATGTCTTTGTCAATGGACATACTGGAGAAGTTAAAAT TGGGGATCTTGGGTTGGCTGCTATCATGCAGCAGCCAACTGCCCGAAGTGTTATAGGTACTCCTGAATTCATGGCTCCAGAGCTATATGATGAAGAATAC ACTGAACTCGTTGACATCTATTCCTTTGGCATGTGCATGCTAGAGATGGTTACTTGTGAATACCCCTATTATGAATGCCGGAATCCAGCTCAGATTTACC GGAAAGTTACCTCGGGTGTAAAGCCAGCTTCACTTTCAAAAGTTGATAATCCTCAAGTTAAGGAGTTCATAGAAAAGTGTTTGGTCCCTGCTACTGTGAG ACTGCCTGCCATTGAACTCCTAAAAGACCCTTTTTTAGCAGCTGGAAGTCCAAAAGAAGTCATCTCTGATTCTCTTCAATTGTCAAGTCTGATGATCAGA CAAGACAAATCACTTCCCATGGAAATAGATAATAACAGCAAGAAGTCTTCAAAAAATTCTTGTACTGAAAGCTTGAACGAAGACATGCAGTTCTCCCCTC TTGAAGTTGAGAGATGCACGGAGACCAATGGTTTCAGGCTAAGAGGGGAAAAAAATACCGATAATACAATCTCAATGACTCTGCGCATTGCTGATCCATG TGGACGGGCAAGGATCATACACTTCACCTTTTTCCTGGAATCTGATACTACTATCACTATAGCAGAGGAGATGGTTGAACAACTTGGATTGTCAATCGAA GATGTTGCTGTGATTGCTGAATTGATTGACAGTTTGATAGTGAAGCTAGGAGCTAGCAGGAGTCCTTCATTATGCTGTGCTACGAGCATGCAGAATGGTT CATATGGAATACAAAGCAGTACAACTTCAAAGACAGGTGCTGATGACAGTAGTATTCAACTTTTTGCGACTGGCAAGGATCAAGAAAATGGAACAACGAT GAAATCCGACATTACTGCCGAATTATATTTCACAGGCGCTAACCAAAATTTGATGCCTGCTGACGACTATGCTGCGGGATTGGATTCAAGCGAGATCAGC TCATCAGACTTTGGAATGTTTGACGAAGGTAGAGTTGCACAGTATCCATCAAGGGGAAGTTCTATTGCGATTTCATCCTCCGACATTCCCCAAAATCTGA GCTTGTCAAGCATATGCTCTCTTTCCATCTCTGACAAAGAAGAGCACGATGAGCTGCAGGTGGAGCTTGCTGCGATCGATATGCAGTATAATATGTATCT CCAGGAACTGTCCAGGATGAGGGAGGAAGCCATGGAAAATGCGAAAAGGAAGTGGGCGGCCAAGAAAAAATTAGCTGTTATGTGA
AA sequence Show only first row Show all	>Lus10033225 pacid=23172077 polypeptide=Lus10033225 locus=Lus10033225.g ID=Lus10033225.BGIv1.0 annot-version=v1.0 MGDPVSFDDCEVVEKDPSCRYIRYDEILGRGAFKTVYKAFDEVDGIEVAWNQMNVEDALQTPEQLERLYSEVHLLKSLKHENIIKCYHSWVDDKTRTINM ITELFTSGCLRQYRKKHNNVDLKAIKNWARQILKGLNYLHSHNPPIIHRDLKCDNVFVNGHTGEVKIGDLGLAAIMQQPTARSVIGTPEFMAPELYDEEY TELVDIYSFGMCMLEMVTCEYPYYECRNPAQIYRKVTSGVKPASLSKVDNPQVKEFIEKCLVPATVRLPAIELLKDPFLAAGSPKEVISDSLQLSSLMIR QDKSLPMEIDNNSKKSSKNSCTESLNEDMQFSPLEVERCTETNGFRLRGEKNTDNTISMTLRIADPCGRARIIHFTFFLESDTTITIAEEMVEQLGLSIE DVAVIAELIDSLIVKLGASRSPSLCCATSMQNGSYGIQSSTTSKTGADDSSIQLFATGKDQENGTTMKSDITAELYFTGANQNLMPADDYAAGLDSSEIS SSDFGMFDEGRVAQYPSRGSSIAISSSDIPQNLSLSSICSLSISDKEEHDELQVELAAIDMQYNMYLQELSRMREEAMENAKRKWAAKKKLAVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10033225 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10000334 [exp]	1.7	0.8959
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	12.6	0.9075
AT5G57330			Galactose mutarotase-like supe...		Lus10000414 [exp]	12.6	0.8563
AT1G08920		ESL1	ERD (early response to dehydra...		Lus10033814 [exp]	13.9	0.8865
AT1G09195			unknown protein		Lus10031400 [exp]	16.7	0.8975
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10001384 [exp]	19.2	0.8726
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	22.8	0.8787
AT3G14240			Subtilase family protein (.1)		Lus10024814 [exp]	29.7	0.8547
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	30.6	0.8436
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	30.7	0.8830

Compare expression of checked genes

Lus10033225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.