Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64650 810 / 0 Major facilitator superfamily protein (.1.2) AT4G27720 788 / 0 Major facilitator superfamily protein (.1) AT3G49310 751 / 0 Major facilitator superfamily protein (.1) AT2G23093 86 / 8e-18 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003219 [exp] 807 / 0 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 769 / 0 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2) Lus10000337 [exp] 328 / 2e-112 AT1G64650 308 / 2e-105 Major facilitator superfamily protein (.1.2) Lus10000336 [exp] 161 / 5e-46 AT1G64650 170 / 1e-52 Major facilitator superfamily protein (.1.2) Lus10011083 [exp] 107 / 6e-25 AT2G23093 502 / 1e-176 Major facilitator superfamily protein (.1) Lus10014854 [exp] 105 / 2e-24 AT2G23093 499 / 2e-175 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145600 [exp] 814 / 0 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G008100 [exp] 776 / 0 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.012G020500 [exp] 769 / 0 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.001G085032 [exp] 147 / 5e-43 AT1G64650 145 / 4e-43 Major facilitator superfamily protein (.1.2) Potri.007G052700 [exp] 100 / 8e-23 AT2G23093 425 / 3e-146 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05631 [flax] [poplar] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Lus10033228 pacid=23172235 polypeptide=Lus10033228 locus=Lus10033228.g ID=Lus10033228.BGIv1.0 annot-version=v1.0 ATGGAGATCTTCTACTTCCTCGTCTTCGGCGGCCTCTCCGCCGTCGTCGCCCTCCTCGAATTCAGCAAGAACAACAAAGATCGCGTCAACACTTCTCCTG CTTTCAATTCCTTCAAAAACAACTACCTCGTCGTCTACTCTCTCATGATGGCTGGAGATTGGCTGCAAGGCCCGTACGTCTACTTCTTGTACAGTCAGTA TGGCTATGGGAAGGGAGATATCGGCCAGCTCTTCATCGCTGGTTTCGGATCCTCCATGCTCTTCGGGACGATTGTTGGTTCTCTTGCTGACAAACAGGGC CGTAAGCGGGCGTCTATCACTTACTGCATAACTTATATCTTGAGTTGCATCACCAAGCATTCTCCTCAGTACAAGGTTTTGATGCTTGGACGGGTGCTGG GAGGCATCGCTACTTCTCTGCTGTTTTCGGCATTTGAGTCTTGGCTAGTCGCTGAACACTTTAAGAGAGGTTTTGATCAACAGTGGCTCTCTGTAACATT CTCAAAGGCCATATTTCTCGGCAATGGCTTAGTAGCTATTGTTGCTGGATTGTTTGGAAATGTACTAGTCGACACCCTGGCACTTGGACCTGTTGCTCCT TTTGATGCTGCTGCATGCTTTCTTGCAATTGGTATGGCAATCATTATCTCTACCTGGCCAGAAAATTATGGAGATCCTTCAGAAAACAAAGATTTGCTTA CTCAATTCAAGGGAGCGGCTGTTGCCATTGCTTCTGATGAGAAGATCGCATTGTTGGGTGCTATCCAATCCCTCTTTGAAGGTTCAATGTACACCTTTGT GTTCCTGTGGACTCCTGCTCTGAGTCCGAGCGGTGAGGAAATTCCACATGGTTTCATTTTCGCTACATTCATGCTGGCTTCTATGTTAGGAAGTTCTGTT GCCTCTCGGTTGCTTGCTCGTCAATCCCCGAAAGTTGAGAGTTATATGCAGATAGTATTTTTAGTCTCTGCAGCTGCCCTTCTGCTTCCTGTTGTAACAA GTTTCCTGGTTGTACCTACTGGAGTCAAAGGTGGGCCAATCTCTTTCTCTGGGTGCATCCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGCGTGGGTAT ATTCTGGCCTTCAATCATGAAAATGAGATCACAATTCATCCCAGAGGAAGCTAGGAGCACCATCATGAACTTCTTCCGCATTCCTCTTAATATTTTTGTA TGCGTCGTGTTGTACAATGTTGACGCATTCCCGATCATTGTAATGTTTGGCATGTGCTCTATTTTCCTCTTTGTTGCTTCTCTTCTACAGCGTAGACTGA TGTTCATTGTGGAGCTCCAAAAATCAAAGTCCCCAGATTGGACAGCAATGAGGGAGTTGGGTACAGAGGATGAGCCACTAAATGCTTGA
AA sequence Show only first row Show all	>Lus10033228 pacid=23172235 polypeptide=Lus10033228 locus=Lus10033228.g ID=Lus10033228.BGIv1.0 annot-version=v1.0 MEIFYFLVFGGLSAVVALLEFSKNNKDRVNTSPAFNSFKNNYLVVYSLMMAGDWLQGPYVYFLYSQYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQG RKRASITYCITYILSCITKHSPQYKVLMLGRVLGGIATSLLFSAFESWLVAEHFKRGFDQQWLSVTFSKAIFLGNGLVAIVAGLFGNVLVDTLALGPVAP FDAAACFLAIGMAIIISTWPENYGDPSENKDLLTQFKGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPSGEEIPHGFIFATFMLASMLGSSV ASRLLARQSPKVESYMQIVFLVSAAALLLPVVTSFLVVPTGVKGGPISFSGCIQLLGFCAFESCVGIFWPSIMKMRSQFIPEEARSTIMNFFRIPLNIFV CVVLYNVDAFPIIVMFGMCSIFLFVASLLQRRLMFIVELQKSKSPDWTAMRELGTEDEPLNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	0	1
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	1.0	0.9060
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10038806 [exp]	5.2	0.8676
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	6.6	0.8862
AT2G26680			unknown protein		Lus10043275 [exp]	7.4	0.8737
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	8.3	0.8827
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	8.8	0.8730
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	12.0	0.8758
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	12.4	0.8551
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	15.1	0.8622
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	15.5	0.8728

Compare expression of checked genes

Lus10033228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.