Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24120 983 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 904 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 895 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT1G65730 722 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G27020 716 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 699 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT3G17650 662 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 657 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 226 / 8e-70 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000879 [exp] 1308 / 0 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10022360 [exp] 914 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 879 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 872 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 865 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 855 / 0 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 837 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10013323 [exp] 722 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 701 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084400 [exp] 998 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 957 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.011G055224 [exp] 929 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.012G024700 [exp] 782 / 0 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.004G069200 [exp] 699 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 699 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G151800 [exp] 688 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 688 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 684 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 665 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10033231 pacid=23172124 polypeptide=Lus10033231 locus=Lus10033231.g ID=Lus10033231.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAACAAGCAGCAGCTGCAAAAGACAAGAAGGAGATTAACAAGAAGCAAGACGAGAACAAAGACAGTGACGAAGATGGTGTTGAGGACGAGC CATCATCAACGTCACCGGAGGAATTCGTCAGAGCGCAGCCGTGGACGAAGCAGATCACAGTGAGAGGAGTCATAGTGAGTATAATGATTGGATCAATGTA CAGTGTGATAGCCATGAAGCTCAACCTTACAACCGGTTTGGTTCCGAATCTCAATGTCTCGGCTGCACTCGTGGCCTTTGTCCTGATCAGGGCATGGACT AAGTTGGTCGGGAAGTTGGGATATGTTACGAAGCCTTTTACAAGACAGGAGAATACTATGATCCAAACTTGTGCTGTGGCATGTTACAGTATTACAATCG GAGGTGGATTTGCTTCTTATCTCTTGGGGCTAAACACAAAGACTTATGAGCTTTCAGGTATTCATACAGAAGGGAACTCTCCTTCTGCTGTTAAGGATCC TGGGTTTGGTTGGATGACTGGTTACCTTTTTCTGGTGTGCTTTGTCGGCCTTTTTGTCTTGATTCCTCTCAGAAAGGTGATGATTGTAGACATGGAGTTG ACTTATCCCAGTGGCTTAGCTACTGCAGTTCTCATCAATGGATTCCACAATCGAGGCGACAAGATGGCTAAAAAGCAGGTTCGCGGGTTCATGAACTACT TCTCGATGAGTTTCGTGTGGGCACTGTTCAAGTGGTTCTATGCAAAGACAGAGGAATGTGGGTTCAATCAGTTCCCAACCTTTGGGTTGAAAGCTTGGAA GCAAACATTTTATTTTGACTTCAACACAACGTACGTGGGAGCAGGGATGATAGTTTCCCACCAAGTGAACCTTTCTCTTCTTTTCGGAGCTATTTTGTCA TATGGGATCATGTGGCCCGTCATCGATGACCTTAAGGGGAAATGGTTTGAATCCAATCTGGAAGAAAGCAGCATGAAGAGCTTATACGGTTATAAGGTTT TTCTGTCAGTAGCACTCATCCTAGGAGATGGGCTCTACAATTTCATTAAGGTAATGAGTTTCACTATCGCCAACATCCACGGCAGGATGAGGAACAAGAA GCTCAAATCAAAAGGATCAGGGGAGTTTGAGATAAAGCAATTGGAGGACAAGAAACAAACAGAGCTATTTCTAAGAGAGAAGATACCCATGTGGATTGGA TTGGTGGGCTACATTTCATTCTCAATCCTCTCAACAATCATGGTACCCATGATTTTCCCACAGCTGAAATGGTACTACGTTGTCGTAGCCTACATCCTAG CTCCCTCCCTCGCCTTCTGCAACGCTTACGGAGCCGGCTTAACCGACATAAACATGGCCTACAACTACGGCAAAGTTGCTCTCTTCATCCTAGCAGCTGT TTCGGGGAAACAAAACGGCGTTGTCGCAGCTCTAGCAGGCTGCGGGCTCGTGAAATCGGTGGTCTCGGTGGCTTGCATACTGATGCAGGACTTTAAAACA GCTCACTTGACACGCACGTCACCTAGGGCCATGTTCGCTAGCCAGGTCATCGGGACTGCACTCGGCTGCATAATGGCTCCCCTCAGTTTCTTCCTTTTCT ACAAGGCTTTCGATGTTGGGAACCCAAACGGGGAGTTTAAGTCTCCTTACGCTTTGATTTACAGAAACATGGCTATACTTGGGGTTGAAGGCTTCTCGGC TTTGCCTAGGCATTGCTTGCAGCTGTGTTACGGGTTTTTTGCATTTGCTGTGGGGATTAACATGGTGAGGGATGCTGCTCCAGGGAAGATTGGGAATTGG ATGCCAATGCCTATGGTCATGGCGATCCCGTTTCTCGTTGGGGCTTATTTCGCTATTGATATGTGTTTGGGGAGTTTGATAGTTTACGTGTGGAGCAAGA TGAAGCCGAAGAAGGCCGAGTTTATGATTCCGGCGGTTGCTTCTGGGATGATCTGTGGGGAAGGGTTGTGGACTCTTCCGTCGGCCATTCTTGCTCTGGC AAAAGTAAATCCGCCAATGTGCATGAAGTTTTCCGGCTCCTAG
AA sequence Show only first row Show all	>Lus10033231 pacid=23172124 polypeptide=Lus10033231 locus=Lus10033231.g ID=Lus10033231.BGIv1.0 annot-version=v1.0 MEQEQAAAAKDKKEINKKQDENKDSDEDGVEDEPSSTSPEEFVRAQPWTKQITVRGVIVSIMIGSMYSVIAMKLNLTTGLVPNLNVSAALVAFVLIRAWT KLVGKLGYVTKPFTRQENTMIQTCAVACYSITIGGGFASYLLGLNTKTYELSGIHTEGNSPSAVKDPGFGWMTGYLFLVCFVGLFVLIPLRKVMIVDMEL TYPSGLATAVLINGFHNRGDKMAKKQVRGFMNYFSMSFVWALFKWFYAKTEECGFNQFPTFGLKAWKQTFYFDFNTTYVGAGMIVSHQVNLSLLFGAILS YGIMWPVIDDLKGKWFESNLEESSMKSLYGYKVFLSVALILGDGLYNFIKVMSFTIANIHGRMRNKKLKSKGSGEFEIKQLEDKKQTELFLREKIPMWIG LVGYISFSILSTIMVPMIFPQLKWYYVVVAYILAPSLAFCNAYGAGLTDINMAYNYGKVALFILAAVSGKQNGVVAALAGCGLVKSVVSVACILMQDFKT AHLTRTSPRAMFASQVIGTALGCIMAPLSFFLFYKAFDVGNPNGEFKSPYALIYRNMAILGVEGFSALPRHCLQLCYGFFAFAVGINMVRDAAPGKIGNW MPMPMVMAIPFLVGAYFAIDMCLGSLIVYVWSKMKPKKAEFMIPAVASGMICGEGLWTLPSAILALAKVNPPMCMKFSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	0	1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	3.3	0.9225
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	6.7	0.9004
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	6.8	0.9040
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	10.1	0.8916
AT1G24140			Matrixin family protein (.1)		Lus10008449 [exp]	13.3	0.7699
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	13.5	0.8596
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	15.0	0.8723
					Lus10001731 [exp]	15.2	0.8279
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	16.2	0.8792
					Lus10016111 [exp]	16.6	0.8765

Compare expression of checked genes

Lus10033231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.