Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41940 580 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 561 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 541 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 529 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 167 / 3e-44 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT4G28550 123 / 2e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 124 / 9e-30 RabGAP/TBC domain-containing protein (.1.2) AT3G59570 123 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 119 / 8e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 118 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022356 [exp] 580 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 554 / 0 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 550 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 333 / 1e-108 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10043064 [exp] 165 / 1e-44 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10004802 [exp] 130 / 6e-32 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10011159 [exp] 124 / 2e-30 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10027697 [exp] 121 / 2e-30 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10022905 [exp] 122 / 1e-29 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146300 [exp] 693 / 0 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 670 / 0 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 619 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 616 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G419100 [exp] 126 / 3e-31 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 127 / 1e-30 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 126 / 1e-30 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.007G132900 [exp] 126 / 2e-30 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.011G135300 [exp] 123 / 4e-30 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.017G023200 [exp] 125 / 5e-30 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10033232 pacid=23172179 polypeptide=Lus10033232 locus=Lus10033232.g ID=Lus10033232.BGIv1.0 annot-version=v1.0 ATGGTAACAGATCACCAAAAACAGTTGCTCAAAGCCTTACGAAGAAGCCGTACCTCACCTTTTACACCTCCATCAAATACCTCCGCCTCATCCTCATCCT CGCCATTGTCCTCGTGGATTTATTTGAGATCGGTTCTCTTAGTGGTAGCCTCTACCTCCTCCTCCTCATCGTCATCTTCCTCACTGCTTCCCTCCTCTGA TCGGGGCAGTCTTAAATCACCTTGGTCTCGTAGGAGGAGGAAACATGCTCTGTTACCAAAGCAATGGAGAAGTCTGTTTACACCTGATGGGAAACTCTCT GACGGAGGCATTAAGTTCCTCAAGAAAGCTCGCAGTGCGGGTGTGGATCCAAGCATTAGAGCGGAAGTTTGGCCATTTCTCCTTGGAGTATATGACGTGA ACAGCTTCGAGGAGGAACGGGATCAAGTTAGAACTCGAAATAGAAGAGCCTATGAAATGCTACGAAGACGGTGTCAACAAATTCTTAAGCGCAATGATAA GGAAAGTAAGTTAAGAGAAACTGATGCGACCAATCGCACGGACAATGCCGAGGAGCATGGTCATGTTCTTGATTCTCCTGATGTAGATTGTGTCACTAGT CCTAGGAATTCGCCTTCTAACGAAACAGGCACCCAAGGGGCGGAGGATCCAGATAGCCGTAATCCAACCCCTAAGCATACTAACTTGACTTCTGAAGGGG AGGATGATAATGGAGTTATCACAAGTGAAGATCCTCATGTCGATGGCACAAAGTCAAGTGATTCTGAATCTTCTGATGCTCCAGAAACTACAACACTTTT GGATGAACATGATCCGGACTTCCATGAGCAGGAACAAGATTCCCCTTCCAGCCTCACAGGTGGAGACACCAAGAGTTACAAAGAGGAAGACTTTGTGACG TGGCAGAGAATTATGCGTGTTGATGCTGTGCGAGCAAATGGAGAATGGATAGTTTATTCACCATCTCAGGCATTAGTATCTGAAGTAAAGGCACGTCAAT TGGCTGAGAGTGTTGGGCTGAAAGACTATGAGCACTTAGAGCTATGCAGGATACATCATGCTGCCCGCTTGGTTGCCATCCTCGAGGCATACGCTCTCTA TGACCCTGAAATAGGCTACTGTCAAGGAATGAGTGATTTGCTGACTCCGATCATAGCAATGATAGAGGAAGACTTCGAAGCGTTCTGGTGCTTTGTCGGG TTCATGAAAAAAGCTCGGCATAACTTCCGTCTCGACGAGGTGGGGATACGAAGGCAACTGGACATGGTCTCAAAGATCATAAAGTGCAAAGACAACCATC TGTACAGGCACCTGGAGCAGCTTCAAGCAGCGGATTGTTTCTTTGTGTACAGAATGGTGGTAGTTCTTTTCCGGAGGGAGTTGAACTTTGAGCAGACGCT AAACCTGTGGGAGGTAATGTGGGCTGACCAAGCTGCCATAAGGGCAGGGATCGGAAAGTCTGCATGGGGGAGAATGAGATTGAGAGCCCCTCCCACAGAT GACTTGTTACTGTATGCAATAGCAGCAGGGGTGTTGCAGAGGAGGAAGATGATAATCGAGAAGTACGACTGTATGGAGGAGATAATGAGGGAGTGTAATA GCATGGCTGGAAACTTGGATGTGTGGAAGCTTTTAGATGATGCACATGACTTGGTTGTGACTCTGCATGACAAACTATAG
AA sequence Show only first row Show all	>Lus10033232 pacid=23172179 polypeptide=Lus10033232 locus=Lus10033232.g ID=Lus10033232.BGIv1.0 annot-version=v1.0 MVTDHQKQLLKALRRSRTSPFTPPSNTSASSSSSPLSSWIYLRSVLLVVASTSSSSSSSSSLLPSSDRGSLKSPWSRRRRKHALLPKQWRSLFTPDGKLS DGGIKFLKKARSAGVDPSIRAEVWPFLLGVYDVNSFEEERDQVRTRNRRAYEMLRRRCQQILKRNDKESKLRETDATNRTDNAEEHGHVLDSPDVDCVTS PRNSPSNETGTQGAEDPDSRNPTPKHTNLTSEGEDDNGVITSEDPHVDGTKSSDSESSDAPETTTLLDEHDPDFHEQEQDSPSSLTGGDTKSYKEEDFVT WQRIMRVDAVRANGEWIVYSPSQALVSEVKARQLAESVGLKDYEHLELCRIHHAARLVAILEAYALYDPEIGYCQGMSDLLTPIIAMIEEDFEAFWCFVG FMKKARHNFRLDEVGIRRQLDMVSKIIKCKDNHLYRHLEQLQAADCFFVYRMVVVLFRRELNFEQTLNLWEVMWADQAAIRAGIGKSAWGRMRLRAPPTD DLLLYAIAAGVLQRRKMIIEKYDCMEEIMRECNSMAGNLDVWKLLDDAHDLVVTLHDKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	0	1
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	1.4	0.8604
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	4.7	0.8245
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	6.0	0.8242
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	11.5	0.7605
AT3G52760			Integral membrane Yip1 family ...		Lus10022723 [exp]	11.8	0.7268
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	12.0	0.7517
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	12.2	0.7962
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	12.7	0.7614
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	17.7	0.7570
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	18.3	0.7925

Compare expression of checked genes

Lus10033232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.