Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 360 / 5e-123 ATMGL methionine gamma-lyase (.1) AT3G01120 139 / 7e-37 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 108 / 1e-26 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 100 / 2e-23 CBL cystathionine beta-lyase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000881 [exp] 464 / 1e-164 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10000880 [exp] 416 / 6e-145 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 398 / 1e-138 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 397 / 2e-137 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001671 [exp] 152 / 5e-45 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1) Lus10000074 [exp] 151 / 5e-45 AT1G64660 244 / 2e-80 methionine gamma-lyase (.1) Lus10030694 [exp] 121 / 1e-30 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 105 / 3e-25 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 95 / 2e-21 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 381 / 5e-131 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 194 / 5e-61 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 139 / 4e-39 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.017G086500 [exp] 125 / 6e-32 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 96 / 6e-22 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10033233 pacid=23172226 polypeptide=Lus10033233 locus=Lus10033233.g ID=Lus10033233.BGIv1.0 annot-version=v1.0 ATGGCAGGGATGTCTGCGGTAGCATCGGTGATGATGCAACTATGCAGCAGCGGCAGACACGTGGTGGCATCAAGCAAGCTGTACGGTGGCACGCATGCAC TGTCGAGTCATTTTCTGCCAAGGGCATGCAACATTACGGTGTCGTTTGTCAACATACTCGACTTGGAGGCTGTGGAGAGAGCTGTGGTGGAAGGGAAGAC CAATGTCTTGTACTTTGAGTCCATCTCCAACCCAACTCTCACCGTCGCTGATATCCCCGAGCTCAGCCGGATCGCTCACAAGAAAGGCGTGAAGGTGGTC GTCGACAACACTTTCGCTCCGATGGTGCTGACTCCGGCGAGGCTCGGCGCTGATGTCGTCGTGCATAGCGTTACCAAGTTCATCAGCGGCGGCAATGACG TAATTGCCGGTACGGGTGTGTGCGGGACTGCAGTCTTTGTGAGCTCAATGATGGATCTCCATCAAGGGGCTTTTCTCCTACTTGGGCCGACAATGCATCC AACGGTAGCATTCGAACTATCACAGAGGATTCCTTACTTGGGCCTGAGGATAAAAGAGCACAGCAGCAGAGCATTAGTTTACCCGGGCCTGATGGACCAC CCACAACACGGCCTGCTGAAGTCCATGGCTAATAAGGATTACGGCTTTGGTGGGATGCTGTCACAAGACATGGGAACCAAGGAACAGGCGGACCGGTTGA TGAACCAGCTTCCGAACGTCACTCATTTCGGGTTCATGGCGGTTAGCTTGGGTTATTACGAGACTATCATGTCTTGCTCCGGTAGTAGCACCAGTAGTGA ACTCAACGATGAGGAGCTCAAGAATGCAGAGAATCTCTCCCGGTCTGGTGAGGGTGTCGGTGGATTACGTGGGGACTTTGGAGCAGGAGTGGAATCAGTT CGAGAAGGCCATTTCTTTCTAGCTAGGGAGCAAGAAAGAGAGAAGCATCTTGGAGTTCTAAAGTCTTGA
AA sequence Show only first row Show all	>Lus10033233 pacid=23172226 polypeptide=Lus10033233 locus=Lus10033233.g ID=Lus10033233.BGIv1.0 annot-version=v1.0 MAGMSAVASVMMQLCSSGRHVVASSKLYGGTHALSSHFLPRACNITVSFVNILDLEAVERAVVEGKTNVLYFESISNPTLTVADIPELSRIAHKKGVKVV VDNTFAPMVLTPARLGADVVVHSVTKFISGGNDVIAGTGVCGTAVFVSSMMDLHQGAFLLLGPTMHPTVAFELSQRIPYLGLRIKEHSSRALVYPGLMDH PQHGLLKSMANKDYGFGGMLSQDMGTKEQADRLMNQLPNVTHFGFMAVSLGYYETIMSCSGSSTSSELNDEELKNAENLSRSGEGVGGLRGDFGAGVESV REGHFFLAREQEREKHLGVLKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	0	1
					Lus10002099 [exp]	3.3	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	4.7	1.0000
					Lus10025316 [exp]	5.7	1.0000
					Lus10011594 [exp]	5.7	1.0000
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	6.3	1.0000
AT5G39200			unknown protein		Lus10030710 [exp]	6.9	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	7.5	0.8208
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	8.8	1.0000
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	9.4	1.0000
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10006735 [exp]	10.4	1.0000

Compare expression of checked genes

Lus10033233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.