Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64670 557 / 0 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT4G24140 542 / 0 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 541 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G17780 303 / 4e-99 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G17720 287 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 51 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G26750 49 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 49 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24160 49 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G26740 47 / 1e-05 ATSEH soluble epoxide hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008266 [exp] 837 / 0 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013629 [exp] 320 / 3e-105 AT5G17780 430 / 8e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003871 [exp] 310 / 5e-101 AT5G17780 429 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036913 [exp] 56 / 4e-08 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10037072 [exp] 50 / 2e-06 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10025172 [exp] 48 / 1e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10038649 [exp] 48 / 1e-05 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 47 / 2e-05 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 46 / 5e-05 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147400 [exp] 660 / 0 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 647 / 0 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 54 / 8e-08 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 50 / 2e-06 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 49 / 3e-06 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 45 / 5e-05 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G134800 [exp] 42 / 0.0005 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 42 / 0.0007 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10033234 pacid=23172108 polypeptide=Lus10033234 locus=Lus10033234.g ID=Lus10033234.BGIv1.0 annot-version=v1.0 ATGGCGTTAAACTCCACGGGGAGATTCATCCACGAGGCCCTCAGCTTCGTCGTGTTTTCTTTTCTCGACCTCCTCGATTTCGTCCTCTGTTTTGCTTACA AGATTCTCGATTTCTTAATCGAAGCGGAATGGAAGCCCTGTTACTGCACGTCGGCGAAAGACGCAATCACTAGCTGCGGTAAGATCTTCGTCTCCGAGCA AGGCGAGTCACGAATCGTTTCGTTGAGTTCGACAAAGCTGGAGTTGGAAGAGATCTCCGACACTCTGTATTCACGCCCGTCGCTGCTCTCTGAGGTTTCT GATTTCACCGGGATTAAGAGATCGGGAGTGATTAGTACTACCGCCGTGGTCAGATCTAGTTTCACCGTGACCTCTACCGTCGTCGAAATGCTGCAGGGTA AGAACATCGCCGGCGGCGGAGGCGGTGGATTGAGGCTACGCACTGATGCTCCGCGGTGGTCCGATTGTGACTGTACAGTGTGCAATAGTTGGACTATTCG AGGGAAAGACGATCTGTTTGTTAGAGTCCAAGGACCAAAAGATGGTCAAACTGCGAAGGAGGATGTGTTATTCATCCATGGTTTCATCTCTTCGTCGTCG TTTTGGACGGAAACATTATTCCCAAACTTCTCGGCCGAAGCTAAATCAACATATAGGATGTTTGCGGTGGATCTGCTCGGGTTCGGAAGGAGTCCTAAGC CAACCGACTCACTCTACACACTGAGAGAGCATCTTGAAATGATCGAAAGGTCGGTGATCGAACCATACAAGGTCAAATCATTCCACATTGTGGCTCACTC GCTCGGCTGCATTTTGGCTCTGGCCCTCGCAGTCAAGTACCCTGGTTCGGTCAAATCGCTCACCCTCCTCGCACCCCCGTATTTCCCTGTACCGAAAGGG GTTCAAGCGACTCAATACGTGATGAGGAAATTAGCGCCGAGGAGAGTGTGGCCGCCAATTGCGTTTGGTGCGTCGTTAGCATGTTGGTACGAGCATATTA CCCGAACGGTTTGCCTGGTTCTATCCAAGAACCATCGGCTATGGGAATTTCTGACCAAACTCGTGACCAGAAACAGGATGAAGACGTTTCTGCTAGAAGG GTTCTTTTGCCACACTCACAACGCAGCGTGGCACACGCTGCACAACATTATCTGCGGCACCGGAAGCAAGCTTGACGGGTACTTGGACCAAGTCAATGAC CGGTTGACCTGTGACGTCAACGTTTTCCACGGCAGCGACGACGAGCTGATTCCGGTGGAGTGTAGCTTCGACGTGCAGCGGAGGGTGCCACGTGCTAAAG TTAAGGTTGTTGAGAATAAAGACCATATTACCATTATTGTGGGCCGGCAGGAGGCGTTTGCTAGGGAACTGGAGGTGATTTGGAGGAGGGCTTGTTAG
AA sequence Show only first row Show all	>Lus10033234 pacid=23172108 polypeptide=Lus10033234 locus=Lus10033234.g ID=Lus10033234.BGIv1.0 annot-version=v1.0 MALNSTGRFIHEALSFVVFSFLDLLDFVLCFAYKILDFLIEAEWKPCYCTSAKDAITSCGKIFVSEQGESRIVSLSSTKLELEEISDTLYSRPSLLSEVS DFTGIKRSGVISTTAVVRSSFTVTSTVVEMLQGKNIAGGGGGGLRLRTDAPRWSDCDCTVCNSWTIRGKDDLFVRVQGPKDGQTAKEDVLFIHGFISSSS FWTETLFPNFSAEAKSTYRMFAVDLLGFGRSPKPTDSLYTLREHLEMIERSVIEPYKVKSFHIVAHSLGCILALALAVKYPGSVKSLTLLAPPYFPVPKG VQATQYVMRKLAPRRVWPPIAFGASLACWYEHITRTVCLVLSKNHRLWEFLTKLVTRNRMKTFLLEGFFCHTHNAAWHTLHNIICGTGSKLDGYLDQVND RLTCDVNVFHGSDDELIPVECSFDVQRRVPRAKVKVVENKDHITIIVGRQEAFARELEVIWRRAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	0	1
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	2.6	0.8811
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	4.2	0.8614
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	6.7	0.8514
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039367 [exp]	6.7	0.8109
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	6.9	0.8524
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	8.5	0.8601
					Lus10017461 [exp]	9.8	0.7846
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	10.6	0.8171
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	14.1	0.8288
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	15.9	0.8215

Compare expression of checked genes

Lus10033234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.