Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42090 467 / 8e-166 Lung seven transmembrane receptor family protein (.1) AT3G09570 325 / 1e-109 Lung seven transmembrane receptor family protein (.1) AT5G18520 311 / 2e-104 Lung seven transmembrane receptor family protein (.1) AT5G02630 255 / 9e-83 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008267 [exp] 522 / 0 AT5G42090 690 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025283 [exp] 312 / 2e-104 AT5G18520 697 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10000821 [exp] 280 / 9e-92 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1) Lus10009065 [exp] 255 / 1e-82 AT5G18520 626 / 0.0 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083100 [exp] 477 / 8e-170 AT5G42090 642 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G147700 [exp] 477 / 9e-170 AT5G42090 639 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G081300 [exp] 318 / 3e-107 AT5G18520 609 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G214900 [exp] 318 / 4e-107 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.013G049500 [exp] 300 / 7e-100 AT5G18520 430 / 2e-148 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10033235 pacid=23172168 polypeptide=Lus10033235 locus=Lus10033235.g ID=Lus10033235.BGIv1.0 annot-version=v1.0 ATGGACGTCCATTCCGCTATGTATAACCTTGAGAGAGGCGGCAACACTCGCGATTACCTATCAGCTGGTAGGACCATCCTCCCTAGGGTTTACTTCTTGT TTTCATTGATCTATTTCGTCCTCGCCGGCATCTGGATTTCAATCCTGTACAAGAAGCTACTCACCGTGTTCAGGATTCATTTCTTCATGCTTGCTGTTGT TGTCATGAAGGCTTTGAATTTGCTCTGTGAAGCTGAGGATAAGTCTTATATCAAGAGGACTGGTACTGCCCATGGTTGGGATGTAGTATTTTACATATTT AGTTTTTTCAAGGGGATTACTCTATTCACTTTGATTGTGTTGATTGGGACTGGGTGGTCATTCTTGAAGCCTTATCTGCAAGATAAGGAGAAGAAAGTGC TGATGATTGTGATACCACTTCAGGTTGTTGCTAACATTGCACAGGTGGTTATCGACGAGACAGGCCCATACGGTCAGGATTGGATCACATGGAAGCAGGT TTTCTTGTTGGTTGATGTGGTTTGCTGCTGTGCGGTTCTATTCCCCATTGTTTGGTCCATCAAGAATCTGAGAGAGGCTGCCAGGACTGATGGAAAGGCT GCAGTGAATTTGATGAAGTTAACCCTTTTTAGGCAGTACTACATTGTGGTCATCTGCTATATTTACTTCACCCGCGTTGTGGTTTACGCACTGGAGACTA TCACTTCGTATAAGTATCTCTGGACCAGTGTGGTGGCCAGCGAGTTGGCTACACTGGCATTTTACTTGTTCACTGGGTTGAAGTTTAAGCCTGAGGCACA CAACCCTTACTTCGTGATTGATGACGAGGAAGAGGAAGCTGCTGCTGAACAGTTGAAGCTCGAAGATGAATTTGAGTTGTAA
AA sequence Show only first row Show all	>Lus10033235 pacid=23172168 polypeptide=Lus10033235 locus=Lus10033235.g ID=Lus10033235.BGIv1.0 annot-version=v1.0 MDVHSAMYNLERGGNTRDYLSAGRTILPRVYFLFSLIYFVLAGIWISILYKKLLTVFRIHFFMLAVVVMKALNLLCEAEDKSYIKRTGTAHGWDVVFYIF SFFKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLLVDVVCCCAVLFPIVWSIKNLREAARTDGKA AVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVASELATLAFYLFTGLKFKPEAHNPYFVIDDEEEEAAAEQLKLEDEFEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	0	1
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	1.0	0.9635
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	1.4	0.9599
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	2.8	0.9402
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	3.0	0.9498
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037514 [exp]	3.2	0.9174
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	3.2	0.9366
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	5.5	0.9095
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	5.8	0.9073
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	5.9	0.9291
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	6.0	0.9357

Compare expression of checked genes

Lus10033235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.