Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01110 161 / 2e-46 IQD18 IQ-domain 18 (.1.2) AT4G00820 135 / 2e-35 IQD17 IQ-domain 17 (.1) AT4G10640 107 / 7e-26 IQD16 IQ-domain 16 (.1) AT1G19870 45 / 8e-05 IQD32 IQ-domain 32 (.1) AT5G07240 43 / 0.0002 IQD24 IQ-domain 24 (.1) AT4G14750 41 / 0.0007 IQD19 IQ-domain 19 (.1) AT5G13460 41 / 0.0008 IQD11 IQ-domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008269 [exp] 477 / 2e-167 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10010104 [exp] 124 / 2e-31 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 116 / 1e-28 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10025593 [exp] 45 / 5e-05 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10005315 [exp] 44 / 0.0002 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10027059 [exp] 44 / 0.0002 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10039573 [exp] 42 / 0.0004 AT5G13460 243 / 9e-76 IQ-domain 11 (.1) Lus10027435 [exp] 42 / 0.0007 AT5G62070 207 / 3e-62 IQ-domain 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G448100 [exp] 224 / 9e-69 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.011G153400 [exp] 222 / 5e-68 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.002G178500 [exp] 182 / 1e-52 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 164 / 4e-46 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.015G005900 [exp] 162 / 2e-45 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.012G022500 [exp] 148 / 3e-40 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.012G139800 [exp] 50 / 1e-06 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.013G127200 [exp] 46 / 3e-05 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.001G021000 [exp] 45 / 5e-05 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.019G095700 [exp] 45 / 6e-05 AT3G59690 433 / 2e-147 IQ-domain 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033237 pacid=23172238 polypeptide=Lus10033237 locus=Lus10033237.g ID=Lus10033237.BGIv1.0 annot-version=v1.0 ATGGGAACCAAGACCACTGAGGCTAACTCTCCTTCTTCTTCTTCTTCTTCTTCATGGTTGACCAAAGTCAAACGAGCTTTCAGGTCTCCGACCAAGTCTA AGAAGACCACCCGGCGCAGAGACGACCACGACTTTGACCACCACCACCTCGACGAAGAAAAGTCGAGAGACTTGAGCTCAGTCCTAGACGGCTGGGGGGA TCATCAGCCACGGAGAAGCGAAGATGTTTCCGATCCACGAAAGGAAGCAGCATTGAAACGGGAGAAGGCACTCGCTTATGCCTTCTGCAACCAGATATGG AAGTCTGGGAATGGAATAAGAAGTCCGTACACAGAACCAGAAGAATCAGAATATAAAGTAGAAGAAGAAGAAGAATTCGTGGAGGACAGAGCAAGATGGC TGGACCGTTGGATGGCCACAAAGCAGTCACAGCATCCGTCAATTGAACGGAGGGATTCAATCAAAACACTAGAGATCGACACATCGAGACCGTACTCTTA CAAGCAACAACCCAGTCCTAGGTCCAGCCACCACAATCACCAAACTCCGATCACGCCATCTCCATCCAGATCGAGAGCACTCCAAGTCCGATCCGCTAGC CCGCGATGCTATTCAGCGGCGCACACGCCAAGCTTCGGGGCGAGATCGTCTTCCTCATCGAGGTACGGAGGGATCGGGGCTAATTCTGGAAGTGTACCGA ATTACATGGCGGCGACCGAGTCAGCAAAGGCGAGGGTTAGATCGCATAGTGCGCCCAGGAGCAGGCCGGGTACTCCGGAGCGAGATCAACGTGCGCTTTC AGGTTCAGCTAAGAAGAGGCTGTCATACCCGGTTCCTGACCCGAGTGGGGGTTTTACGGGGTTTAGTCAGAATTTGAGGACGCCAAGCTTCAAGAGTATG CACAATCTGGGAATGGAGAGAGGATCTTCTTATTATGCTAATTCCTGTTATACTGATAGCATTGGTGGGGAGATTTCTCCATGTTCCACCACTGATCTTA GGTGGCTTAGATAG
AA sequence Show only first row Show all	>Lus10033237 pacid=23172238 polypeptide=Lus10033237 locus=Lus10033237.g ID=Lus10033237.BGIv1.0 annot-version=v1.0 MGTKTTEANSPSSSSSSSWLTKVKRAFRSPTKSKKTTRRRDDHDFDHHHLDEEKSRDLSSVLDGWGDHQPRRSEDVSDPRKEAALKREKALAYAFCNQIW KSGNGIRSPYTEPEESEYKVEEEEEFVEDRARWLDRWMATKQSQHPSIERRDSIKTLEIDTSRPYSYKQQPSPRSSHHNHQTPITPSPSRSRALQVRSAS PRCYSAAHTPSFGARSSSSSRYGGIGANSGSVPNYMAATESAKARVRSHSAPRSRPGTPERDQRALSGSAKKRLSYPVPDPSGGFTGFSQNLRTPSFKSM HNLGMERGSSYYANSCYTDSIGGEISPCSTTDLRWLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	0	1
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	3.6	0.9273
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	5.2	0.9032
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	6.2	0.9239
					Lus10042300 [exp]	11.0	0.8854
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	12.4	0.8887
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	13.1	0.8673
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	15.5	0.9024
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	16.3	0.8938
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	19.9	0.8383
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	21.0	0.8959

Compare expression of checked genes

Lus10033237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.