Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10630 295 / 1e-98 Glutaredoxin family protein (.1) AT1G32760 223 / 5e-71 Glutaredoxin family protein (.1) AT5G06470 158 / 2e-46 Glutaredoxin family protein (.1) AT5G03870 160 / 9e-46 Glutaredoxin family protein (.1) AT1G64500 155 / 6e-44 Glutaredoxin family protein (.1) AT5G39865 150 / 5e-42 Glutaredoxin family protein (.1) AT3G28850 142 / 1e-38 Glutaredoxin family protein (.1) AT3G57070 136 / 1e-36 Glutaredoxin family protein (.1) AT5G58530 129 / 3e-35 Glutaredoxin family protein (.1) AT5G01420 126 / 8e-33 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008270 [exp] 550 / 0 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10017029 [exp] 166 / 1e-47 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021255 [exp] 160 / 1e-47 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10013597 [exp] 157 / 1e-46 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021353 [exp] 163 / 2e-46 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10001669 [exp] 153 / 2e-43 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10017335 [exp] 151 / 6e-43 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10003194 [exp] 146 / 1e-40 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10028742 [exp] 139 / 5e-38 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G448300 [exp] 325 / 2e-110 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 182 / 7e-54 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 172 / 4e-50 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 152 / 1e-43 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 153 / 2e-43 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 150 / 4e-43 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 148 / 2e-41 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 149 / 3e-41 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 147 / 1e-40 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 143 / 3e-39 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10033238 pacid=23172070 polypeptide=Lus10033238 locus=Lus10033238.g ID=Lus10033238.BGIv1.0 annot-version=v1.0 ATGGGCTGCGTCTCTTCAAATCTGCTCAACAACGAAGAACACTTCTCCCAGCTAGGCGGTTCCGCATTAGGCGTCGGCCACCACATTGTCTCCCTCACCT CCACCACTTATGGCCTCCTCAACCTTGACCCGCCGCCGCCACTCTCTCCGACTGCCACCACCATCACCACCACCATTGCTCCTACTCCTCCAACTCGATT TACTCTAGGCTCCGTCTTCCCTTCCTCCCTCTCCGACTCCTCCAATTCCAACCCCAACCGCACACCTCTCTGGTCGCAGCCCAGCCCTTTCCGTTCTGAT CGTCCAGAAGTAATCAATTCTTGGGAGCTCATGTCCGGCCTGGATCCAGTCGACAGCTTCCGATTCTCAACCCTCCCTGCTCGAGAAGTGGTGGAGGAGG AACAGATTAGCAGCATAACACCTCCTGCGGTCCTCAAAGAAAACTTAAACCCTAATTTCAGTAAGGAACCCCCAAAATTTTCAAATTCGCTAGACGAATT TGAAATACTCTGCCCTCCGAAAGGGGAGAACAGAGTAGTGGTCTACACTACCACCTTGAGAGGGATACGGAAGACTTTCGAGGCCTGCAACGCCGTCCGC GCAGCAATGGAGTCGTTCGGGGTTGCGATCTGCGAGAGGGATATCTCCATGGATCGCGGCTTCAAGGACGAGCTGAGAGAGTTGATGATGAAGATTCGAT CTGGTAGTGGGAGTGGTGATGTCCCTGTGGTGCCGAGGGTGTTCGTGAAGGGGAGGTACGTGGGAGGGGCGGAGGAGCTGATGAGGATTGTGGAGGAAGG GATGATGGCTGATTTGCTGCAAGGTGTTGCGAGGAATAAAGGGAAATTAGGGTGCTGTGAAGGTTGTGGGAATGCGAGGTTCTTGCCGTGTTTTGCCTGC AATGGGAGCTGTAAGATTGTGACAGTGGTGAAGGAGAAGGAATCGGCTGCGGGGAATGTTGTGGTAAGGTGTTCTGATTGTAATGAGAATGGTTTGGTTC TGTGCCCGATTTGTAGCTGA
AA sequence Show only first row Show all	>Lus10033238 pacid=23172070 polypeptide=Lus10033238 locus=Lus10033238.g ID=Lus10033238.BGIv1.0 annot-version=v1.0 MGCVSSNLLNNEEHFSQLGGSALGVGHHIVSLTSTTYGLLNLDPPPPLSPTATTITTTIAPTPPTRFTLGSVFPSSLSDSSNSNPNRTPLWSQPSPFRSD RPEVINSWELMSGLDPVDSFRFSTLPAREVVEEEQISSITPPAVLKENLNPNFSKEPPKFSNSLDEFEILCPPKGENRVVVYTTTLRGIRKTFEACNAVR AAMESFGVAICERDISMDRGFKDELRELMMKIRSGSGSGDVPVVPRVFVKGRYVGGAEELMRIVEEGMMADLLQGVARNKGKLGCCEGCGNARFLPCFAC NGSCKIVTVVKEKESAAGNVVVRCSDCNENGLVLCPICS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	0	1
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	1.0	0.9748
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031147 [exp]	2.4	0.9282
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	2.4	0.9434
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	4.2	0.9176
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	4.5	0.9314
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	4.6	0.9394
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	6.2	0.9122
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	7.7	0.9299
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10026284 [exp]	8.5	0.9015
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	9.5	0.9252

Compare expression of checked genes

Lus10033238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.