Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 394 / 5e-133 Pectin lyase-like superfamily protein (.1) AT4G20050 286 / 5e-91 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008272 [exp] 810 / 0 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 495 / 2e-172 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 474 / 5e-164 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10038369 [exp] 358 / 7e-119 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 326 / 4e-107 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 296 / 8e-95 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 208 / 8e-62 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008699 [exp] 67 / 2e-13 ND 48 / 2e-07 Lus10008700 [exp] 49 / 3e-07 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075400 [exp] 402 / 1e-136 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 386 / 5e-130 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 385 / 1e-129 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G159900 [exp] 284 / 5e-90 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 279 / 3e-88 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033240 pacid=23172135 polypeptide=Lus10033240 locus=Lus10033240.g ID=Lus10033240.BGIv1.0 annot-version=v1.0 ATGTGCTTCCTAATTGTATTCACAACACTAATTATTTTACATCTCCAACAAGCATCATGTTCTAAAGACCACCGCAGGAAACAACAACTAGGACACCTAA TAGAAGACATAGTTGCGGAAATTGAGCAGATCGCCGCCGGAGCTCAGGGGCCTCCGACTCCCGAACGACCGCCGCCCAAGGTCGGAGGAGTGTTTTACCC GATCGGGTTTGGAGCAGACCCGACAGGTCATAAAGACAGTACCGACGCGATACAGCGGGTCTTGAATGACGCATTTCTACAGCTCTGTGATCAGAAGCGG AAATTGCTCCCCGGAATCAAGGACGTGGGCGGCCCCGTCATCGATCTCCAAGGTGGCAACTACCTAATCTCCAAACCCATCATTTTCCCTCCTTCCGGCG GTGGCAACATTTTGATAAAAGAAGGGAGCTTAAGAGCGACAAAGGACTTCCCCGACGACAGGTTCCTAATCGAGCTCATCTCCCCAAGATCAGAGGTCCT AATCAACAAAACAGACTCCATTCAAGAATTCCAAGGAGTCGGGATCTACTACGAGGACATAACCTTCAGAGACATCCTCTTCGATTCCGGCTTCCACGGG GGCGGCCTTCTGGTTGTGGACGCCGTCAGGACACGCGTCATCAACTCCTACTTCATGAACTTCACTTCCCAGGGCATGTCAATCCAAGGCGGCCACGAGA CGTTCATCTCCTCTTGCTTCATCGGCCAAAAACCCTCTGTCGGAAACGACAAAAGCGAGAAAAACTTCTCCGGCGTCGGCATCGACATGGCCAGCAACGA CAACGTCATCACCGACACGGTCATATTCTCCTCGGAGATCGGGCTGTTGTTGAGAGGGCAGGCAAATGTAATCAACGGGCTCCACGTGTACAACAAGGGG ACTGAGTTAGGTGGGTCCGGGATTTACGTGAAAGAAGGTGCGGCGTTTACTCGATTGGATAATTGTTACATGGATTACAACTCTGTCGTAATCGAGGATC CGTATTTCACGCACGTGACGAATAGTCTGTTCTTGGGGGACGGGAATGTGGTGGTGAGGTCGGTTTACGGGAGGATTACGAGCTTGACGATTACAGATAA TTATTTTCACGGGATTAGGCTTCCGATTGTGGAGTTGGACGGGGAGTTCGAGAACGTTGACCAGGTGGTGGTGGAGAATAATCAGGCGAAGTTTATGGCG GTGAAATCGACGGTGGGGAAGATGACGGTGGGTGGGAAGGGGAAGAGATGGGTGGCGGATTTTAACGAACAGTTGTTGTTTCCCAACAAGATTAATCATT TTCATTACTCTGTTTTTGTGAAGCCGAAACAGGGAGGAGGAGAAGGAGGTCAGTTTAAGCTTCCGATTCATGCGGCGACGAATGTTTCGGGGAATGTGGT GGTGGTTGAGAGCGAGGAGGTTGTTGATGCGGTGGTTTCGGTGGTGGTTGATCAGTTTAACCAGATCGGAGAACCCACTGCGGCTCAGTGGCTGGCTGTT GACTAG
AA sequence Show only first row Show all	>Lus10033240 pacid=23172135 polypeptide=Lus10033240 locus=Lus10033240.g ID=Lus10033240.BGIv1.0 annot-version=v1.0 MCFLIVFTTLIILHLQQASCSKDHRRKQQLGHLIEDIVAEIEQIAAGAQGPPTPERPPPKVGGVFYPIGFGADPTGHKDSTDAIQRVLNDAFLQLCDQKR KLLPGIKDVGGPVIDLQGGNYLISKPIIFPPSGGGNILIKEGSLRATKDFPDDRFLIELISPRSEVLINKTDSIQEFQGVGIYYEDITFRDILFDSGFHG GGLLVVDAVRTRVINSYFMNFTSQGMSIQGGHETFISSCFIGQKPSVGNDKSEKNFSGVGIDMASNDNVITDTVIFSSEIGLLLRGQANVINGLHVYNKG TELGGSGIYVKEGAAFTRLDNCYMDYNSVVIEDPYFTHVTNSLFLGDGNVVVRSVYGRITSLTITDNYFHGIRLPIVELDGEFENVDQVVVENNQAKFMA VKSTVGKMTVGGKGKRWVADFNEQLLFPNKINHFHYSVFVKPKQGGGEGGQFKLPIHAATNVSGNVVVVESEEVVDAVVSVVVDQFNQIGEPTAAQWLAV D

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20040			Pectin lyase-like superfamily ...		Lus10033240 [exp]	0	1
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	13.4	0.5853
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10012236 [exp]	14.7	0.5198
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	24.2	0.5968
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10018258 [exp]	39.9	0.5655
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	40.6	0.5697
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	57.9	0.5024
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	65.4	0.5328
					Lus10011438 [exp]	69.3	0.5030
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	81.1	0.5016
					Lus10031653 [exp]	103.0	0.4661

Compare expression of checked genes

Lus10033240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.