Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32780 445 / 2e-155 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 424 / 5e-147 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 295 / 1e-96 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G22430 290 / 9e-95 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 289 / 4e-94 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G43940 285 / 5e-93 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 281 / 3e-91 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 278 / 3e-90 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G42250 276 / 3e-89 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G63620 102 / 9e-24 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029759 [exp] 298 / 7e-98 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 297 / 2e-97 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 293 / 6e-96 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10004786 [exp] 293 / 6e-96 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10034042 [exp] 291 / 3e-95 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10004785 [exp] 288 / 2e-93 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 280 / 1e-90 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10029757 [exp] 263 / 2e-84 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10040457 [exp] 264 / 3e-84 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152800 [exp] 510 / 1e-180 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.011G152900 [exp] 509 / 3e-180 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.005G060000 [exp] 317 / 3e-105 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 315 / 2e-104 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 314 / 4e-104 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 313 / 1e-103 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 311 / 5e-103 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 311 / 5e-103 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 300 / 1e-98 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 299 / 3e-98 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10033241 pacid=23172069 polypeptide=Lus10033241 locus=Lus10033241.g ID=Lus10033241.BGIv1.0 annot-version=v1.0 ATGGTGATGCGAATCAGAAGAAGCTCTACTTCCGTCATCAAGCAGCTGATCCGCTCTCCCTTCTCCGGCCGTTATATGGATCTCCGTACAATTAGCAGTA CAGCCGGCCATGTCATCACTTGCCTAGCTGCGGTGGCGAAAGGGCCAAGGCAACCACTGGAGCTGGAGGAGATAGAGGTGGATCCGCCGCAGAGGATGGA GGTCCGCCTTAAGATCCTCTACACATCCGTCTGTCACACTGATCTCAGCGCCTGGAAATTAGAGAACGAAGGACAGAGGGCGTTTCCGCGGATTCTGGGG CACGAAGCGGTCGGGGTGGTGGAGAGCGTGGGAGAAGGGGTGGAAGACGTCAGTGAAGGGGACCACGTCATCCCTATTTTCAACGGCGAATGCGGCCACT GTGTCTACTGCCGGACGGCGGTACCGACGGCGACCAATATCTGCAAACATTTTCGGGTGGACCCCATGAGATCCGTGATGAGGAACGACTCCCAATGTAG GTTCAGGAGTCGAATCGACGGCGGACAGATTTTTCATTTCCTCAACACTTCCACCTTCTCCCAGTACACCGTTCTTGACTCTGCTTGTGTCGTCAACCTC AAATCCCCGCTTCCCTCCGCCGGCGGCGACCCTGAAGCGGACGATGTACTGCATCCTCCTCCTCTTTTGATATCTGATCATCATCTGAAGATGATGAGCT TGTTCAGTTGTTGCGTCTCCACCGGTGTTGGGGCGGCGTGGAATGTTGCGGATGTACAAGCTGGATCAAGCGTCGCCGTTTTTGGACTGGGAGCTTTGGG ACTCGCTGCAAGTCAAGGAGCCAGGGTGAGGGGAGCTTCCAAGATAATAGGAGTTGACATCAATCCCGACAAGTTCATCAAAGGGAAAGCAATGGGAATC ACGGATTTCATCAACCCAATGGAGAGCTCGAAGCCTGTTCATGAGAGGATAAGAGAAATGACAGATGGTGGGGGCGTCGACTACAGCCTGGAATGCGTAG GCAACTGTCAACTCCTCCGAGAGGCCTTCTTGTCCACCCATGATGGCTGGGGTAAGACTGTACTAGTAGGGATTTATCCAACTCCTCAGCTACTGCCGAT CCATCCGATGGAGATGTTCGACGGTCGAACCATCACCGGTACCATATTTGGTGATTTCAGGGGCAAATCCCAACTCCACCACCTTGCCCATCGATGCCTG CAGCCTGATATGAACTTGGAAGAGCTTATAACGCACGAGCTTCCTTTCGAGAAGATTAACGACGCCTTTCAACTCGTCCTCTCTGGGAAATCTCTGAGAT GCCTCCTGCATTTCTAA
AA sequence Show only first row Show all	>Lus10033241 pacid=23172069 polypeptide=Lus10033241 locus=Lus10033241.g ID=Lus10033241.BGIv1.0 annot-version=v1.0 MVMRIRRSSTSVIKQLIRSPFSGRYMDLRTISSTAGHVITCLAAVAKGPRQPLELEEIEVDPPQRMEVRLKILYTSVCHTDLSAWKLENEGQRAFPRILG HEAVGVVESVGEGVEDVSEGDHVIPIFNGECGHCVYCRTAVPTATNICKHFRVDPMRSVMRNDSQCRFRSRIDGGQIFHFLNTSTFSQYTVLDSACVVNL KSPLPSAGGDPEADDVLHPPPLLISDHHLKMMSLFSCCVSTGVGAAWNVADVQAGSSVAVFGLGALGLAASQGARVRGASKIIGVDINPDKFIKGKAMGI TDFINPMESSKPVHERIREMTDGGGVDYSLECVGNCQLLREAFLSTHDGWGKTVLVGIYPTPQLLPIHPMEMFDGRTITGTIFGDFRGKSQLHHLAHRCL QPDMNLEELITHELPFEKINDAFQLVLSGKSLRCLLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	0	1
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	1.4	0.9462
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	1.4	0.9670
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	3.7	0.9296
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009623 [exp]	7.5	0.9284
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009001 [exp]	8.8	0.9365
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	8.8	0.9450
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	8.9	0.9424
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	9.6	0.8974
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10000898 [exp]	9.9	0.9141
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	12.5	0.8946

Compare expression of checked genes

Lus10033241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.