Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 424 / 4e-149 CID11 CTC-interacting domain 11 (.1.2) AT4G10610 405 / 5e-142 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G49390 381 / 5e-132 CID10 CTC-interacting domain 10 (.1.2) AT3G14450 358 / 1e-123 CID9 CTC-interacting domain 9 (.1) AT1G53650 331 / 4e-113 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 315 / 1e-106 CID13 CTC-interacting domain 13 (.1) AT2G23350 55 / 4e-08 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G55340 55 / 5e-08 PHIP1 phragmoplastin interacting protein 1 (.1) AT1G45100 54 / 8e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 53 / 2e-07 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008275 [exp] 609 / 0 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10008851 [exp] 402 / 5e-140 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 393 / 2e-136 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 360 / 1e-123 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10002835 [exp] 65 / 3e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 65 / 3e-11 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 58 / 6e-09 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10003287 [exp] 57 / 7e-09 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10010370 [exp] 57 / 9e-09 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152700 [exp] 424 / 6e-149 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.015G005400 [exp] 397 / 3e-138 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 381 / 1e-131 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 369 / 5e-128 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.001G448800 [exp] 369 / 1e-127 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.011G095800 [exp] 364 / 3e-126 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.010G209701 [exp] 72 / 1e-13 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.001G304000 [exp] 64 / 9e-11 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 63 / 9e-11 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.004G177000 [exp] 60 / 1e-09 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10033242 pacid=23172175 polypeptide=Lus10033242 locus=Lus10033242.g ID=Lus10033242.BGIv1.0 annot-version=v1.0 ATGGCTGTTGTCGACACCGCTGCTGCTGGCGATGCTGAAATCAGTATGGGTTTAACCACTTCTCCCCCGCCGTCGTCCGATCAGGACCGATCTGCCGCCG ACCACCAACCTCCGTCGGACACTCTCAACAACGACAACAACACCACCAACCCCCGATCCGATCCCGACGGTGATTCCGACGGCGATGCCGCCCGCAGTTA CGACAGGAACATGAGGGAATTGCGGGACTTGTTCTCCAAGCTCAACCCAATGGCGGAGGAGCTTGTTCCCCCTTCCTTATCCAACAACGGCGTCGGCCAT TACAATAATCACTTGCTCACTGCTGCACTAGCTACTCTCCATGCTTTTGCTCCTGCCTTCTACCCTGAGAACGGTGCCGTTTTCCCACCCGATGCTGTCA AAATTGGCTCCCCTGCTCGAAAGAAGAAAAACTATGGTCAATCAAAGCGTAGGATCAACAGTAGAACAAGCATGGCTCAGCGGGAGGACATAATTCGGAG GACGGTTTATGTTTCTGATATTGATCAACAGGTCACTGAAGAACAGCTTGCAGCTCTATTTGTTGGCTGTGGGCAGGTTGTTGACTGTCGCATATGTGGT GATCCCAATTCTGTTCTGCGTTTTGCTTTCATTGAGTTCACCGACGAGGATGGCGCACAGGCTGCATTGAATCTGTCAGGAACAATGCTGGGATTTTACC CTGTGAAGGTGCTGCCGTCCAAGACTGCCATAGCACCAGTTAACCCAACCTTTTTGCCTAGGAATGATGATGAACGGGAAATGTGCACTAGAACCATTTA CTGCACAAATATTGACAAGAAGGTGACTCAAGCTGAAATTAAGACCTTTTTCGAATCTGTTTGTGGGGAGGTTTATCGTCTGAGGCTTCTTGGAGACTAT CACCACTATACTCGCATCGCTTTTGTGGAGTTTGTGCAGGCTGAAAGTGCAATTGCTGCTCTGAACTGCAGTGGAATGGTTCTGGGATCATTGCCCATAA GGGTTAGCCCGTCGAAGACTCCTGTTAGGCCACGAGCTCCTCGTCTTCCCGGGCAGTGA
AA sequence Show only first row Show all	>Lus10033242 pacid=23172175 polypeptide=Lus10033242 locus=Lus10033242.g ID=Lus10033242.BGIv1.0 annot-version=v1.0 MAVVDTAAAGDAEISMGLTTSPPPSSDQDRSAADHQPPSDTLNNDNNTTNPRSDPDGDSDGDAARSYDRNMRELRDLFSKLNPMAEELVPPSLSNNGVGH YNNHLLTAALATLHAFAPAFYPENGAVFPPDAVKIGSPARKKKNYGQSKRRINSRTSMAQREDIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG DPNSVLRFAFIEFTDEDGAQAALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRNDDEREMCTRTIYCTNIDKKVTQAEIKTFFESVCGEVYRLRLLGDY HHYTRIAFVEFVQAESAIAALNCSGMVLGSLPIRVSPSKTPVRPRAPRLPGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10033242 [exp]	0	1
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10008275 [exp]	1.0	0.9404
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	12.6	0.8580
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	13.2	0.8172
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	16.5	0.8446
AT3G56820			unknown protein		Lus10012105 [exp]	26.0	0.8283
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	29.2	0.8415
AT5G67540			Arabinanase/levansucrase/inver...		Lus10011543 [exp]	29.9	0.8428
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	37.8	0.8214
AT1G21830			unknown protein		Lus10018177 [exp]	39.0	0.8269
AT1G14630			unknown protein		Lus10039139 [exp]	43.1	0.8226

Compare expression of checked genes

Lus10033242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.