Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10570 1026 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 1025 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 1001 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT2G40930 803 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 644 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT5G46740 96 / 3e-20 UBP21 ubiquitin-specific protease 21 (.1) AT2G24640 94 / 7e-20 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G04860 95 / 1e-19 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT4G17895 92 / 8e-19 UBP20 ubiquitin-specific protease 20 (.1) AT2G32780 90 / 4e-18 ATUBP1 ubiquitin-specific protease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017343 [exp] 1364 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 1341 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 1211 / 0 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10027289 [exp] 834 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 790 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10013369 [exp] 676 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 656 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 630 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 629 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152500 [exp] 1250 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 1241 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G033800 [exp] 857 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 849 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 692 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 641 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 157 / 2e-41 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.006G266100 [exp] 100 / 7e-22 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 100 / 2e-21 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G123200 [exp] 97 / 2e-20 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10033243 pacid=23172251 polypeptide=Lus10033243 locus=Lus10033243.g ID=Lus10033243.BGIv1.0 annot-version=v1.0 ATGGATAATCAAGCCAACGGTAGCTTGTCTTCCTCCTCCTCCAGCAGTCCCGATCAGGAGAAGCAGATCGTGAAACAATTGACTAATGAAGCTGAGTTGA GTTTGAAGGAAGGCAATTTGTACTTTGTCATCTCCACTAGGTGGTTCTTCAAATGGGAGAGGTATGTTGGTCAAACTGCCAGCGATTGTTTATCTGGCTG GCAATCATCTGATTACTTAAATGCTGATGGCTCTACTAGTAAGCATGTTGATAGACCTGGGCCTATCGATAACTCCGACCTAGTTGACGATGAAAGTCAT TCAGAGGAGGGTGAACTTGATCTGGTTAGGACCTTGCTTGAAGGTAAAGACTACGTGTTGGTTCCTCAGCAAGTTTGGGAAAAGCTTATGCAGTGGTATA AGGGAGGTCCACCATTGCCGAGGAAGATGATTTCACAGGGTACATTTGACAAAAGGCAGCTCAATGTTGAGGTATATCCACTTCGTTTGAAGTTGATTGA TTCCAGAGACGATAGCATATCAGCAATCAGGTTAAGCAAAAAGGCTACGTCCCAAGAGCTGTATCAGAGGGTGTGTGCACTTAGAGGAGTAGAACAAGAA AAGTACTTGCTCTGGGACTACTTCAATAAACGGAGGCATTCACGTTTGCTATATTCTCGCAATACCCTTGAGGAATTGAACTTGCAGATGGACCAAGAGA TTCTCCTTGAACTACAAGTAAATCTGTCTAATGCTTTCCGATCTGGACGAGATTCAACTGGGAATGAATTAGCTGTGGTACCCCTGGAGCCTCCAAGGAC CTGTCAGTCAATTGCTGGGGGCTTAAGTGTCACAAATGGCTACTCAACCTCATGTAGCCGCAACACACGGCTGAGTGAGGTGAACCCCATCTTTAACGAC ACCAATGAGGATTTTGATTCTCAAAACTCTTCCAGGGAAGGGGAGAAGGGAGGTTTGGCCGGATTGCAGAATTTGGGAAATACTTGCTTTATGAACAGTG CTTTACAGTGCTTAGTCCATACTCCCCCGCTTGTTGACTACTTCCTGCAAGATTATACGACAGAGATCAACAAAGAAAATCCATTAGGAATGCATGGTGA GCTTGCAGTTGCATTCGGTGTGTTGTTGAGGAAATTGTGGTCGCCTGGGCAGACTGCAATAGCTCCACGTGCATTTAAAGGGAAACTAGCACTATTTGCT CCCCAGTTCAGTGGCTACAATCAGCACGATTCCCAAGAGCTTCTTTCCTTTTTACTGGATGGCCTGCATGAAGATCTAAATCGAGTTAAGAGAAAGCCAT ATGTTGAAATGAAGGACAGGAGTGGTCATCCTGATGACGAAGTGGCAGCTGAGAGTTGGCAGTATCACAAGGCCCGGAATGATTCTGTGATTGTTGACGT TTGCCAGGGTCAATACAAGTCTACATTGGTATGTCCAGATTGCGGCAAAGTTTCAGTTACTTTTGATCCACTCATGTACTTGTCATTACCACTGCCTTCA ACTGTCATGCGGTCTATGACTGTGACAGTGTTTTATGGGGACGGAAGTGGTCTTCCAATGCCATACACGGTATCAGTGATGAAAGATGGGCAGTGTAGGG ATCTCAACAAGGCGCTGAGTGCCGCGTGCGGTTTGAGAACAGATGAAACTCTTTTGTTGGCAGAAGTCTATGAACACAAGATCTATCGTTTCTTTGATAA TCCTTCACAGCTGTTGACTTCGATAAAGGATCATGAACATCTTGTGGCCTACCGACTGTCTGTACATGGGGGAACAAACAAGAAACTAGAGGTTATTCAT CGGGAAAGGTCTTCAGCTGACTTTCAGAACTGTATGGTTGGGAAATATTTTGGAGTACCTCTGGTTACTTATTTGGAAGAAGACCCAACAACTGGAGCTG ATATTGATGTTTCTGTATCAAGATTACTATCACCCTTGAAGAGAACATGTTCTTCTATGTTGGCTCACAGTGGCAGGGAAAATAATAATCACGTTGCTGC TAACGGGGAAACATCAGATGGACCAAGAAATTATTCAATGGATGTTGTTGCAGAGGATGGACCCTGCCAACTACTGTCAAACCAGCTTTTCATGATTGAA AATCAGGGCTCAACCTACAAGCGTATCTTTAGGGACTCTGTCTTAAAAACTTTCAATCATACGAAAATCTTCTTGGACTGGACGGAAGAAGAACATCGGT TATACGATTCTAGTTATCTGAAGGATCTTCCTGATGTGTATCATAAGACTGGATTTACTGCAAAGAAAACCCGATCTGAAGTTGTCTCTTTATTTTCGTG CTTGGATGCATTCTTAAGGGAAGAACCTCTAGGGCCTGATGATATGTGGTACTGCCCAAACTGTAAAGAACACCGTCAAGCTACCAAGAAACTAGACTTG TGGATGTTGCCAGAGATTCTTGTCGTTCATCTGAAACGGTTCTCGTATAACAGATTCTTGAGGAACAAACTGGTTACTTTTGTGGATTTCCCAATTCATA ATCTCGATTTGAGCAAATACGTCAAGCAAAAAGATAGTGAGATGTCTTGCACTTACGATCTTTATGCCATCAGCAACCATTATGGTGGTCTTGGCGGGGG ACACTACACAGCATACGCAAAGCTAATCGACGAGGACAAATGGTATAATTTCGATGATAGCAGGGTTACTCCTGTTAATGAGTCTGACATCAAGACTTCG GCTGCATATGTGCTCTTCTACAGAAGAGTGAAACCTCAAAGCTCGGAGGGCCAGGAGATGAAGACATCATAG
AA sequence Show only first row Show all	>Lus10033243 pacid=23172251 polypeptide=Lus10033243 locus=Lus10033243.g ID=Lus10033243.BGIv1.0 annot-version=v1.0 MDNQANGSLSSSSSSSPDQEKQIVKQLTNEAELSLKEGNLYFVISTRWFFKWERYVGQTASDCLSGWQSSDYLNADGSTSKHVDRPGPIDNSDLVDDESH SEEGELDLVRTLLEGKDYVLVPQQVWEKLMQWYKGGPPLPRKMISQGTFDKRQLNVEVYPLRLKLIDSRDDSISAIRLSKKATSQELYQRVCALRGVEQE KYLLWDYFNKRRHSRLLYSRNTLEELNLQMDQEILLELQVNLSNAFRSGRDSTGNELAVVPLEPPRTCQSIAGGLSVTNGYSTSCSRNTRLSEVNPIFND TNEDFDSQNSSREGEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVDYFLQDYTTEINKENPLGMHGELAVAFGVLLRKLWSPGQTAIAPRAFKGKLALFA PQFSGYNQHDSQELLSFLLDGLHEDLNRVKRKPYVEMKDRSGHPDDEVAAESWQYHKARNDSVIVDVCQGQYKSTLVCPDCGKVSVTFDPLMYLSLPLPS TVMRSMTVTVFYGDGSGLPMPYTVSVMKDGQCRDLNKALSAACGLRTDETLLLAEVYEHKIYRFFDNPSQLLTSIKDHEHLVAYRLSVHGGTNKKLEVIH RERSSADFQNCMVGKYFGVPLVTYLEEDPTTGADIDVSVSRLLSPLKRTCSSMLAHSGRENNNHVAANGETSDGPRNYSMDVVAEDGPCQLLSNQLFMIE NQGSTYKRIFRDSVLKTFNHTKIFLDWTEEEHRLYDSSYLKDLPDVYHKTGFTAKKTRSEVVSLFSCLDAFLREEPLGPDDMWYCPNCKEHRQATKKLDL WMLPEILVVHLKRFSYNRFLRNKLVTFVDFPIHNLDLSKYVKQKDSEMSCTYDLYAISNHYGGLGGGHYTAYAKLIDEDKWYNFDDSRVTPVNESDIKTS AAYVLFYRRVKPQSSEGQEMKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	0	1
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	1.7	0.9074
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	2.8	0.9013
AT1G23230			unknown protein		Lus10016701 [exp]	9.5	0.8733
AT5G55060			unknown protein		Lus10021546 [exp]	9.8	0.8869
AT3G48860			unknown protein		Lus10016721 [exp]	10.4	0.8771
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	12.0	0.8520
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	12.0	0.8599
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	12.8	0.8960
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	14.0	0.8825
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	17.8	0.8332

Compare expression of checked genes

Lus10033243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.