Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32860 476 / 2e-167 Glycosyl hydrolase superfamily protein (.1) AT5G42100 449 / 7e-157 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G27500 404 / 7e-140 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G30080 367 / 1e-124 Glycosyl hydrolase superfamily protein (.1) AT4G18340 360 / 4e-122 Glycosyl hydrolase superfamily protein (.1) AT2G26600 333 / 1e-111 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 317 / 3e-105 Glycosyl hydrolase superfamily protein (.1) AT2G05790 316 / 5e-104 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 306 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 302 / 5e-98 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008277 [exp] 709 / 0 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 553 / 0 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 543 / 0 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 411 / 4e-142 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 410 / 1e-141 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10028122 [exp] 369 / 6e-126 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 357 / 1e-121 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 354 / 2e-119 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 350 / 6e-119 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152400 [exp] 543 / 0 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 529 / 0 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 407 / 6e-141 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 405 / 4e-140 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 381 / 3e-130 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G097400 [exp] 377 / 5e-129 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G132700 [exp] 375 / 3e-128 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 342 / 2e-115 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 334 / 3e-111 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 319 / 2e-105 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10033244 pacid=23172245 polypeptide=Lus10033244 locus=Lus10033244.g ID=Lus10033244.BGIv1.0 annot-version=v1.0 ATGAACAAGTTCATCACATTCCTCACCCACTCTGCTCCTCTTCTTCTTCTACTCTTCCTTTCAGCTGGACTGGTGGTGGTAGATGCAATCGGGATCAACT ATGGCCAAATCGCCAACAACCTCCCTTCTCCAGAAAACGCAGTCCCTTTAATCAAAGCTCTGGGAGCAACTAAAGTCAAGCTCTATGACGCCAGCCCGCC TGTACTCAAAGCATTCGCCCACTCTGGAGTCGAATTCGTTGTCGGCCTCGGCAATGAGTTCCTCTCCAAGATGCGAGATCCTGTCAATGCACGCGCCTGG GTCAAATCAAACGTCCAGTCCTACCTCCCGGCCACAAACATCACCTGTATCACCGTCGGCAACGAAGTCCTCACCCTAAACGACACCTCCTACGTCGCCG ACCTCCTCCCGGCGATGCAGTCCATCCACTCCGCCGTCCAATCTCTAAACCTCCAGAAGCAGGTCACCGTCACCACTCCTCACTCCATCGCCATCCTCCA GAGCTCGTATCCACCTTCTGCCGGCGCATTCAGCAAAGATCTGACCGGATGTTTGACTCAGATCTTGAACTTCCACGCCAAGACCGGATCTCCTTTCCTC ATCAACGCTTACCCTTACTTCGCCTACAAGGCGAATCCGAAGCAGGTGCCGCTGGATTTCGTCCTGTTCCAGCCGAATCAAGGAATGGTCGACTCTGGGT CGAAGCTGCACTACGACAACATGCTGTTCGCTCAGATCGACGCGGTGCATTCGGCGCTGGCTGCGCTAGGGTTTAAGGACGTCCCCGTTCAGATCTCGGA GACCGGGTGGCCGTCCAAAGGCGACGCTGATGAAGCTGGGGCCACACCGGAGAATGCCAAGAAGTACAACGGCAACCTCATCAAGACTATCTGCCAGCGG AAGGGGACTCCGATGAGGCCCAGCACTGATCTGAACATTTTTGTTTTTGCTCTGTTCAACGAGAACATGAAGCCCGGCCCAACTTCTGAAAGGAATTATG GGCTTTTGAAGCCCGATGGAACCCCTTCGTACTCAATCGGAATAGACATGCCGGCCGTCAGCAGCGGAGGCGGAAATAAGAGCAGTCCCGCCACCACCAG CGGAGGCGGTGGAGGAGGGGCGAGCTCCGGGAGTCCGCAGTCGGCACCGGGGAGTTCTTCGACTGGGTTTCTGTCGATATCTAGAGGCTCGCTGCCGGCG TCCAGATCTTTCCAATGGTGGGGAGGCATGTTGATGATTGTTGTCGTTTTGTGTCAGTAG
AA sequence Show only first row Show all	>Lus10033244 pacid=23172245 polypeptide=Lus10033244 locus=Lus10033244.g ID=Lus10033244.BGIv1.0 annot-version=v1.0 MNKFITFLTHSAPLLLLLFLSAGLVVVDAIGINYGQIANNLPSPENAVPLIKALGATKVKLYDASPPVLKAFAHSGVEFVVGLGNEFLSKMRDPVNARAW VKSNVQSYLPATNITCITVGNEVLTLNDTSYVADLLPAMQSIHSAVQSLNLQKQVTVTTPHSIAILQSSYPPSAGAFSKDLTGCLTQILNFHAKTGSPFL INAYPYFAYKANPKQVPLDFVLFQPNQGMVDSGSKLHYDNMLFAQIDAVHSALAALGFKDVPVQISETGWPSKGDADEAGATPENAKKYNGNLIKTICQR KGTPMRPSTDLNIFVFALFNENMKPGPTSERNYGLLKPDGTPSYSIGIDMPAVSSGGGNKSSPATTSGGGGGGASSGSPQSAPGSSSTGFLSISRGSLPA SRSFQWWGGMLMIVVVLCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	1.0	0.8967
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	1.7	0.8804
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	2.0	0.8915
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	4.9	0.8733
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	6.0	0.8492
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	6.3	0.8557
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	7.1	0.8605
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000224 [exp]	7.9	0.8241
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	9.5	0.8507
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	11.7	0.8373

Compare expression of checked genes

Lus10033244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.