Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 490 / 1e-173 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 362 / 3e-122 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 342 / 1e-114 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 339 / 9e-114 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G13062 139 / 8e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 133 / 7e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008281 [exp] 452 / 9e-161 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 397 / 5e-136 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 334 / 3e-111 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 325 / 1e-107 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10000083 [exp] 175 / 9e-53 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10033334 [exp] 122 / 8e-31 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10034791 [exp] 104 / 4e-24 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10015566 [exp] 93 / 7e-22 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151500 [exp] 521 / 0 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.001G450100 [exp] 515 / 0 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 471 / 6e-165 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 463 / 7e-162 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 332 / 1e-110 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G162600 [exp] 325 / 6e-108 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.007G002700 [exp] 126 / 3e-32 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 125 / 9e-32 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033247 pacid=23172093 polypeptide=Lus10033247 locus=Lus10033247.g ID=Lus10033247.BGIv1.0 annot-version=v1.0 ATGGCTTTGTGGCCACTCTTACTTGACATTCTCCAACGCCCCAAGCTTCTCGATGTCCTCGCTGAGCTCTCCCTCTTAGCTGCTCCTCTCTGGATTGCTG TCGTCGTCGGCGTTCTCGTTGGATGGTCCTGGAAGCCTAAGTGGGCTGTTCTCTCCGCTCCGCAATCTCCGGCTTCTTTTTCCTCAAGCTTCAAGCTTCA GCTTCCCAGCTTCATCCCATGGGTTTCCAATGACGATGTGAATCAAATCCACTCTTCCTCTGACGCTTCCCCGCCGACCCTTTCTTCTGACTCAAGTTCC GGGAAGGGGAAAACGAGTATTGTGTCAACGGATGATTTGGAGTACTTGTCTAAGCTTGTTGAAGTCAAAGATGGAGGCCCTGCTTGGATTCAGATGATGG ACCGTTCTACCCCTACCATGACCTACCAAGCTTGGAGGAGGGATCTTCAGAGTGGGCCTCCCCAGTACCGTAGCAGTACTGTATACGAGGATGCAACTCC TGAAATGGTGAGGGACTTCTTCTGGGATGATGAGTTTCGAGCTAAGTGGGATGACATGCTTTTACATTCTGAAACTCTTGAGAAGTGTCCTACCACAGGA ACCATGATGGTTCAGTGGGTTCGTAAGTTTCCTTTCTTCTGTAGCGACAGAGAGTACATCATTGGCCGCCGGATTTGGGAATCTGACAGAACATACTACT GTGTCACCAAGGGAGTTCCATGTACTTCTGTTCAAAGGCGCAACAAGCCACGCCGTGTTGATCTCTACTATTCAAGCTGGTGCATTCGTGCAGTTGAATC AAAGAGAGGAAATGGTCAGATGACTGCGTGTGAGGTATTACTTTTCCATTACGAGGACATGGGCATCCCATGGGAGATTGCGAAACTAGGAGTGCGACAG GGAATGTGGGGAGCTGTCAAGAAAATTGAGCCAGGTCTACGAGCGTATCAGAAAGAAAGAGCGTCCGGAGCCCCACTTTCTCCGTGCGGTACCATGGCTC AAATCAACACCAAAGTGACTCCAGACTACCTGGAATCTCTAGATAGCAGCAGCAGCAACCGCAACACTAGCGATTCAACCGAGATTGAAACCTCAGGTTC GATGGAGAAACCACAGAAGGGTTGCATACCAAGGATACTAGTAGTTGGTGGAGCTATTGCTCTAGCGTGTACCCTTGACAAGGGACTCCTTACAAAGGCA GTCATCTTTGGAGTAGGTAGAAGATTTGCTAAGATTGGGAGGAGATTCTGA
AA sequence Show only first row Show all	>Lus10033247 pacid=23172093 polypeptide=Lus10033247 locus=Lus10033247.g ID=Lus10033247.BGIv1.0 annot-version=v1.0 MALWPLLLDILQRPKLLDVLAELSLLAAPLWIAVVVGVLVGWSWKPKWAVLSAPQSPASFSSSFKLQLPSFIPWVSNDDVNQIHSSSDASPPTLSSDSSS GKGKTSIVSTDDLEYLSKLVEVKDGGPAWIQMMDRSTPTMTYQAWRRDLQSGPPQYRSSTVYEDATPEMVRDFFWDDEFRAKWDDMLLHSETLEKCPTTG TMMVQWVRKFPFFCSDREYIIGRRIWESDRTYYCVTKGVPCTSVQRRNKPRRVDLYYSSWCIRAVESKRGNGQMTACEVLLFHYEDMGIPWEIAKLGVRQ GMWGAVKKIEPGLRAYQKERASGAPLSPCGTMAQINTKVTPDYLESLDSSSSNRNTSDSTEIETSGSMEKPQKGCIPRILVVGGAIALACTLDKGLLTKA VIFGVGRRFAKIGRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	0	1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	4.0	0.8255
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	4.6	0.8236
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	5.7	0.8278
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	8.9	0.7944
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10015532 [exp]	13.3	0.7574
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	14.8	0.8035
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	15.0	0.7849
AT4G01400			unknown protein		Lus10012607 [exp]	17.5	0.7681
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	17.7	0.7897
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	24.2	0.7706

Compare expression of checked genes

Lus10033247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.