Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32930 618 / 0 Galactosyltransferase family protein (.1) AT1G05170 524 / 0 Galactosyltransferase family protein (.1.2) AT1G77810 517 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 499 / 5e-177 Galactosyltransferase family protein (.1) AT4G26940 488 / 8e-173 Galactosyltransferase family protein (.1.2) AT1G33430 483 / 8e-171 Galactosyltransferase family protein (.1.2) AT1G11730 461 / 3e-162 Galactosyltransferase family protein (.1) AT1G22015 450 / 7e-158 DD46 Galactosyltransferase family protein (.1) AT5G53340 256 / 2e-82 Galactosyltransferase family protein (.1.2) AT4G32120 218 / 1e-67 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008282 [exp] 816 / 0 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 528 / 0 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 527 / 0 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 516 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 488 / 5e-173 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 481 / 1e-169 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 475 / 2e-167 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 472 / 2e-166 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 466 / 2e-163 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450200 [exp] 698 / 0 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G151400 [exp] 659 / 0 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.014G153700 [exp] 533 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 518 / 0 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 512 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 509 / 0 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 488 / 6e-173 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 488 / 4e-172 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 484 / 1e-171 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 266 / 2e-86 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033248 pacid=23172207 polypeptide=Lus10033248 locus=Lus10033248.g ID=Lus10033248.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGCAGCAGGCCTCTAAGACCCACTAGCGGTGTTTCCACCAAATGGCTCGCCATCTTCTGCATTGCCAGCTTCTTCTTGGGCTACCTTGTTG TTAACAGGTTCTGGCCTTTTCCTGATTCAGCCAAAGTAGATGAAAGAAGTTCATCCATGGAGCTTAAGTCCAAGTTACTCCATCCCACCGTTAACTGTGA AAAGAAGGAGACTACAGACATTCTTTCTCAAGTTTCTCAAACACATGATATGATCATGACATTAGACAAAACAATCTCCACTCTGGAGATGCAGCTGGCT GCTGCAAGAGCTTCCAAAGCTTCTAACGAAGAAGAACCTCTCGTTGAGACAAAACCAGGAACTGAGCATTTGAAGAATCGGCCAAAGGTTTTCTTTGTCA TGGGTATAATGACTGCATTTAGCAGCAGAAAGCGAAGAGACTCAATAAGAGAGACATGGATGCCCAAAGGGCAGGATTTAAAGAGGTTGGAAACCGAGAA GGGTATAATCATGCGGTTTGTCATTGGACACAGTGCATCTTCAGGTGGGATTCTAGATCGAGCTATAGTTGCTGAAGAAGGCCAGTACAAGGATTTTCTA CGGCTGAATCACATAGAAGGTTATCATGAACTGTCATCGAAAACGCAAATATACTTCTCAACTGCTGTTGCCAAATGGGATGCCGACTTCTACATAAAAG TTGACGACGATGTACACATTAACCTTGGTATGGTTGGGTCCACATTGGCACGTCACAGATCGAAACCCCGTGTGTACATAGGTTGCATGAAATCTGGACC AGTCCTAGCTCAGAAAAGTGTAAAGTACCATGAACCAGAGTACTGGAAGTTTGGGGAGGAAGGGAATAAGTACTTCAGGCACGCAACAGGACAGATATAC GCTGTTTCGAAAGATCTGGCCACCTACATTTCTGTTAACCGGCATATACTTCATAGATATGCAAACGAAGATGTATCACTGGGGTCATGGTTTATCGGAC TAGACGTGGAACATGTCGATGATCGAAGCCTCTGCTGCGGTTCACCTCCCGATTGTGAGTGGAAGGCGGATGCAGGTAATGCTTGCGCTGCGTCGTTTGA TTGGTCATGCAGCGGGATATGCAAATCGGCGGAGAGAATGGCAGAAGTGCACCAGCGTTGTGGAGAAGGTGATGGAGCAATCTGGCACACCAGTTTCTAG
AA sequence Show only first row Show all	>Lus10033248 pacid=23172207 polypeptide=Lus10033248 locus=Lus10033248.g ID=Lus10033248.BGIv1.0 annot-version=v1.0 MASGSRPLRPTSGVSTKWLAIFCIASFFLGYLVVNRFWPFPDSAKVDERSSSMELKSKLLHPTVNCEKKETTDILSQVSQTHDMIMTLDKTISTLEMQLA AARASKASNEEEPLVETKPGTEHLKNRPKVFFVMGIMTAFSSRKRRDSIRETWMPKGQDLKRLETEKGIIMRFVIGHSASSGGILDRAIVAEEGQYKDFL RLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHINLGMVGSTLARHRSKPRVYIGCMKSGPVLAQKSVKYHEPEYWKFGEEGNKYFRHATGQIY AVSKDLATYISVNRHILHRYANEDVSLGSWFIGLDVEHVDDRSLCCGSPPDCEWKADAGNACAASFDWSCSGICKSAERMAEVHQRCGEGDGAIWHTSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	0	1
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	4.1	0.8447
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	5.1	0.8310
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	6.0	0.8267
AT3G17900			unknown protein		Lus10013273 [exp]	8.7	0.8110
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	10.5	0.7938
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	13.3	0.8162
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	13.7	0.7928
AT3G09180			unknown protein		Lus10016953 [exp]	14.5	0.7798
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	14.7	0.7953
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	14.9	0.8061

Compare expression of checked genes

Lus10033248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.