Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54850 340 / 4e-113 ATPUB14 plant U-box 14 (.1) AT3G46510 308 / 1e-100 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 270 / 9e-84 AtPUB12 PLANT U-BOX 12 (.1) AT1G23030 253 / 8e-80 PUB11 ARM repeat superfamily protein (.1) AT1G71020 243 / 2e-77 ARM repeat superfamily protein (.1.2) AT5G42340 228 / 7e-70 PUB15 Plant U-Box 15 (.1) AT2G23140 188 / 2e-54 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G29340 168 / 2e-47 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 162 / 1e-46 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G67340 156 / 3e-43 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037970 [exp] 426 / 5e-147 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 300 / 2e-97 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 299 / 5e-97 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 253 / 1e-79 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 250 / 2e-75 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10012260 [exp] 220 / 8e-67 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 220 / 1e-66 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10038699 [exp] 203 / 2e-61 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10007511 [exp] 205 / 4e-61 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035700 [exp] 362 / 3e-122 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 355 / 2e-119 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 300 / 2e-97 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 294 / 3e-95 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 255 / 2e-80 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 253 / 7e-80 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 229 / 2e-70 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 220 / 8e-67 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 215 / 3e-65 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 200 / 2e-59 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10033249 pacid=23172110 polypeptide=Lus10033249 locus=Lus10033249.g ID=Lus10033249.BGIv1.0 annot-version=v1.0 ATGAAAGATCATGTTATTGTCTCTACTGCCAGGTATGAAAGATCTTGCATTCAGAAATGTCCGAAGACCCAGCAAACACTCCTGCATACTGCACTTACTC CTAACTATGTTTTGAAGAGTTTGATATCCCTGTGGTGTGAAAGCAATGGTGTTGAACTACCTAAGCATCAAGCTGCTTATAGAAACAGAAAACTGGGGAT CGGTGTCTCGGATTGTGATCAAACAACCATTCTTGGTTTATTAGAGAAATTGGCGAATGACAATCCAGAACAGCAGAGAGCTGCAGCTGGAGAGCTCCGT TTGCTAGCAAAGAGAAATGCCGACAACAGAGTATGCATTGCTGAAGCAGGAGCCATTCCGCTCCTTGTTGAGTTATTGTCCTCTCCAGATTCCCTCACAC AGGAGCACGCTGTTACAGCACTTCTGAATCTCTCCATTAATGACGCAAACAAGGGGATTATTGTCAATGCAGGAGCTATACCCGATATCGTAGATGTTCT GAAAACTGGAAGCATTGAAGCCAGGGAAAATGCAGCAGCTACCCTTTTTAGTCTATCTGTCATAGATGAGAACAAGGTGGCAATAGGAGCAGCTGGAGCC ATCCCGGCACTAACCAACTTGCTCTGCAAGGGTTCTCCGCGAGGAAAGAAAAATGCTGCAACTGCTATATTCAATCTTTCAATATACCAGGGAAATAAAA CAAGAGCTTTTAGAGGAACAGGATGGGAAGCTGCCTCCTCTGTTTTCTTATTGAGAAACAAAGTGATGAGATGGAGAGGAGGAAGAAAGAAAGAAAGAAA GGGAGAGGCGGAGGGGGGAGAAATTTTTTTTAAAATTTTTATAAAATTGTTTGGTGATGATTAG
AA sequence Show only first row Show all	>Lus10033249 pacid=23172110 polypeptide=Lus10033249 locus=Lus10033249.g ID=Lus10033249.BGIv1.0 annot-version=v1.0 MKDHVIVSTARYERSCIQKCPKTQQTLLHTALTPNYVLKSLISLWCESNGVELPKHQAAYRNRKLGIGVSDCDQTTILGLLEKLANDNPEQQRAAAGELR LLAKRNADNRVCIAEAGAIPLLVELLSSPDSLTQEHAVTALLNLSINDANKGIIVNAGAIPDIVDVLKTGSIEARENAAATLFSLSVIDENKVAIGAAGA IPALTNLLCKGSPRGKKNAATAIFNLSIYQGNKTRAFRGTGWEAASSVFLLRNKVMRWRGGRKKERKGEAEGGEIFFKIFIKLFGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10033249 [exp]	0	1
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	6.0	0.8466
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	8.0	0.8372
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	10.0	0.8106
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	10.7	0.8224
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	11.0	0.8006
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	11.8	0.7814
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	18.7	0.7851
AT1G33970			P-loop containing nucleoside t...		Lus10005300 [exp]	20.2	0.7974
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	22.0	0.7882
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	24.7	0.7794

Compare expression of checked genes

Lus10033249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.