Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 395 / 2e-132 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 388 / 9e-128 NAC ANAC014 NAC 014 (.1.2) AT3G49530 252 / 2e-77 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G24590 246 / 2e-75 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G17730 195 / 2e-58 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G65910 204 / 7e-58 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 198 / 4e-57 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 192 / 6e-55 NAC ANAC045 NAC domain containing protein 45 (.1) AT4G17980 184 / 3e-54 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 184 / 1e-53 NAC ANAC096 NAC domain containing protein 96 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008285 [exp] 1046 / 0 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 508 / 2e-175 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10017353 [exp] 439 / 2e-149 AT4G35580 245 / 7e-75 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 284 / 1e-88 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 280 / 3e-87 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10042284 [exp] 198 / 6e-59 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 197 / 2e-58 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 206 / 4e-58 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 205 / 9e-57 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149300 [exp] 539 / 0 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 524 / 2e-180 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.012G007500 [exp] 291 / 9e-91 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 281 / 5e-87 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.010G174600 [exp] 197 / 7e-58 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.008G081500 [exp] 192 / 5e-56 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 187 / 1e-55 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 195 / 3e-54 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.012G038100 [exp] 185 / 4e-54 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.002G182000 [exp] 183 / 5e-54 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10033251 pacid=23172254 polypeptide=Lus10033251 locus=Lus10033251.g ID=Lus10033251.BGIv1.0 annot-version=v1.0 ATGGCTGTGATATCGATGCAATCTCTGCCTCTGGGCTTCAGATTCAGGCCTACTGACGAGGAACTCATCAATCACTACCTCAGGTTGAAGATCAACGGCC GCGATTCCGAGGTCGAGGTCATCCCTGAAATCGATGTCTGCAAATGGGAGCCTTGGGATCTTCCTGGTCTATCTGTGATCAAGACTGATGATCCGGAGTG GTTCTTCTTCTGCCCTCGTGACCGAAAGTACCCTAATGGCCATAGGTCTAACAGGGCTACTGAAGCTGGATACTGGAAAGCTACTGGCAAAGACCGTACC ATTAGGTCCAGGAGGCCTGGCTCTACTCCTGTTTCCATCGGCATGAAGAAGACGTTGGTCTTCTACAGAGGTCGTGCTCCAAAGGGTGAGCGAAGTAACT GGATTATGCACGAGTATCGCCCTACCCTCGAAGATCTTGATGGCACCGGACCAGGCCAGGCTCCTTTTGTCCTCTTTCGCTTGTTCCGGAAGCCGGAGGA GAAGGTTGATGTGGTGAAGTATGATGAAGTAGAGCAAACTGGTTACTCTCCAACCACTACCAAGTCCTCCCCTGATGAAGCAACGTCAGAATTAGTTCAG GAGACTGCTACGTCCGGCATGCGAGGTGGAAAACAGTCGGATACTTTGTTAGAGAGCATGACGCCTACTACTGCTTTTGTTCCTGCTGATAGCAGCTGCA ATAGTCATATGAATTCAGATGTGGAGGATCATGTCACGGAATTGACTGTTGAAGAGGCAAATGCACTGGTGGATGGGAGTTCCCATCCTTATGAGTTCAC ATCTGGTGAAGTTGATTACAAAATGTTCTCCCCAATGCAGCCGCACCCTTATGGAGATCTGGGGCTACATTTCGACTCTCATTATGACAATGACTTTGGT AATGACCTTAATGGATTCCAATTCCAGGATGGCACAAGTGAACAAGATGTATCCCTCACAGAGCTGTTGGATGAGGTGTTCCATAACGATGATTTGTCTT TTGAAGAAGCCTCCAGTGACAAAAATCTTGGTTTACTTCCAGAAAGTTTCCATGTAAGAAACTGGGAACTACACAACAATATGGATGCCAAAATGGTTCA AGCACAGATGGAATCAGCTTCTCGATCTTCTTTTGCACAGACAGGATTCTTTACCAGAGAATCTGGAAACAGAAATATTGGTGGCAACGGAGATTGTTTT GTTACGCAAGCAACTCATCCTGCCAATTCTGCAACAAACACATCCTTTGGAATGTCCCACCCCATGGAGAACCCTGTAAGCAATGCAAATGATGGTGGAA CTGGAATCAAGATTAGACAACGACAACCTCGAGCACGAGCTTCAGACAACTTTGTTGGCCAGGGTACTGCTGCAAGGAGGCTACGGTTGCAATCAAGACT AGGAGACACAAGCTGCGTAGAAGATGAAGATGAAGTGCAATCAACTCTAACCGAGGGCCAAGATGCTAAAGAAGGCGATGAGGCAATTGGTGATGATCAG ATGAAAGAAGGCCCGGTCGTCAAGCAGAACCTCAGGCTGAGGTTAAAAGGGAATGATAAAAGCGAACATGGAGGTTCGATTTCTCAAACTTATGAGAAGA ATGGTTCTGCTATTAGGTCAACATGGGTGATTGGTTTATCAGGAGTTGTGTTTCTGGTGGCGGGTATGGTTGGAATATGCAGATGTCTGTGGTGA
AA sequence Show only first row Show all	>Lus10033251 pacid=23172254 polypeptide=Lus10033251 locus=Lus10033251.g ID=Lus10033251.BGIv1.0 annot-version=v1.0 MAVISMQSLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGLSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRT IRSRRPGSTPVSIGMKKTLVFYRGRAPKGERSNWIMHEYRPTLEDLDGTGPGQAPFVLFRLFRKPEEKVDVVKYDEVEQTGYSPTTTKSSPDEATSELVQ ETATSGMRGGKQSDTLLESMTPTTAFVPADSSCNSHMNSDVEDHVTELTVEEANALVDGSSHPYEFTSGEVDYKMFSPMQPHPYGDLGLHFDSHYDNDFG NDLNGFQFQDGTSEQDVSLTELLDEVFHNDDLSFEEASSDKNLGLLPESFHVRNWELHNNMDAKMVQAQMESASRSSFAQTGFFTRESGNRNIGGNGDCF VTQATHPANSATNTSFGMSHPMENPVSNANDGGTGIKIRQRQPRARASDNFVGQGTAARRLRLQSRLGDTSCVEDEDEVQSTLTEGQDAKEGDEAIGDDQ MKEGPVVKQNLRLRLKGNDKSEHGGSISQTYEKNGSAIRSTWVIGLSGVVFLVAGMVGICRCLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	0	1
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	1.4	0.9462
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	1.7	0.9450
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	2.2	0.9484
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	2.8	0.9436
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	4.5	0.9354
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	5.3	0.9115
AT1G71110			unknown protein		Lus10013492 [exp]	5.5	0.9110
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	6.5	0.9299
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	8.8	0.9209
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	10.5	0.9211

Compare expression of checked genes

Lus10033251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.