Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63310 74 / 8e-17 unknown protein AT1G75260 52 / 8e-08 oxidoreductases, acting on NADH or NADPH (.1) AT2G46630 42 / 0.0001 unknown protein AT2G20362 39 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008287 [exp] 308 / 5e-108 AT1G63310 76 / 3e-17 unknown protein Lus10001963 [exp] 47 / 3e-06 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1) Lus10012616 [exp] 44 / 4e-05 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1) Lus10005994 [exp] 44 / 4e-05 AT2G46630 / unknown protein Lus10030217 [exp] 43 / 8e-05 AT2G46630 51 / 1e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G452900 [exp] 101 / 2e-27 AT1G63310 92 / 3e-24 unknown protein Potri.011G149100 [exp] 99 / 2e-26 AT1G63310 95 / 2e-25 unknown protein Potri.002G034700 [exp] 49 / 1e-06 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) Potri.005G228400 [exp] 43 / 5e-05 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1) Potri.002G175400 [exp] 42 / 0.0001 AT2G46630 107 / 3e-25 unknown protein Potri.014G102466 [exp] 41 / 0.0003 AT2G46630 114 / 1e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033253 pacid=23172227 polypeptide=Lus10033253 locus=Lus10033253.g ID=Lus10033253.BGIv1.0 annot-version=v1.0 ATGTTTCCAGGAGCAAACAAGTCGAGCTCGGCTCCCCATCCCGACCACCAACCTAAGCTTCTCGATCGCCACGTACGAGAAATGGTCAATACCATCACCC AACGAGTTTCCAGCATCCCAACTAGTGGTGGTAGCCATTCAGCCGCGGCCACCACCACCACCGCCACTGACGATGATGAACTGCAACAACATGGTGTGAG TGTCATCACCCTCGCTGGAACCAACACGGGTGCCACAATGCGCGGTGAAATTGACCGCGACTCTCTCCAGCCTTCCAAACGAGGGGTAGTAGGACGCAGG AGCAACAAGAGCAGCGATATGGAGGATGAAGAGGAAGAGGAGGAGGATGCTAATGTTGGGACCTACGTCAACAGCAACTTCCAAGCAGTGAACAACTCTA TCATGCTGGACAGCAAGTACAGCACCAACGACCCTGGCGTCCACTTGGAAATCTCCGACCACCGCAGAGAAGGTAAACTCGACACGAGGGGAAGGAAGAA CAATGTTGTTGATGACCACGGACCTTCAAAATCTCGGGGCCTTCGTCAACGTCCTATGCACCACTCGGAGCATGACGCATCCACCTCCGAGTAA
AA sequence Show only first row Show all	>Lus10033253 pacid=23172227 polypeptide=Lus10033253 locus=Lus10033253.g ID=Lus10033253.BGIv1.0 annot-version=v1.0 MFPGANKSSSAPHPDHQPKLLDRHVREMVNTITQRVSSIPTSGGSHSAAATTTTATDDDELQQHGVSVITLAGTNTGATMRGEIDRDSLQPSKRGVVGRR SNKSSDMEDEEEEEEDANVGTYVNSNFQAVNNSIMLDSKYSTNDPGVHLEISDHRREGKLDTRGRKNNVVDDHGPSKSRGLRQRPMHHSEHDASTSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63310			unknown protein		Lus10033253 [exp]	0	1
AT1G63310			unknown protein		Lus10008287 [exp]	1.0	0.9890
AT1G60360			RING/U-box superfamily protein...		Lus10025612 [exp]	2.4	0.9621
AT3G16330			unknown protein		Lus10038274 [exp]	3.5	0.9511
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	4.6	0.9531
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	5.5	0.9469
AT2G46630			unknown protein		Lus10005994 [exp]	6.0	0.9242
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	6.5	0.9288
					Lus10015565 [exp]	8.7	0.9208
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	8.8	0.9455
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	9.5	0.9451

Compare expression of checked genes

Lus10033253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.