Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59660 618 / 0 Nucleoporin autopeptidase (.1) AT1G10390 573 / 0 Nucleoporin autopeptidase (.1.2) AT1G80680 142 / 4e-34 NUP96, SAR3, MOS3, PRE PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) AT1G63540 47 / 0.0001 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008288 [exp] 1461 / 0 AT1G10390 1013 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10033256 [exp] 336 / 3e-103 AT1G10390 247 / 8e-71 Nucleoporin autopeptidase (.1.2) Lus10040555 [exp] 134 / 1e-31 AT1G80680 605 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10007993 [exp] 134 / 2e-31 AT1G80680 1280 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10015795 [exp] 54 / 4e-07 AT1G24310 404 / 2e-140 unknown protein Lus10037010 [exp] 54 / 6e-07 AT1G24310 478 / 2e-169 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148800 [exp] 810 / 0 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 805 / 0 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.003G180100 [exp] 172 / 1e-43 AT1G80680 1272 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Potri.010G059100 [exp] 51 / 3e-06 AT1G24310 448 / 1e-157 unknown protein Potri.007G036600 [exp] 43 / 0.0009 AT4G37130 424 / 4e-144 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF04096 [flax] [poplar] Nucleoporin2 Nucleoporin autopeptidase
Representative CDS sequence Show only first row Show all	>Lus10033254 pacid=23172150 polypeptide=Lus10033254 locus=Lus10033254.g ID=Lus10033254.BGIv1.0 annot-version=v1.0 ATGTTTGGTTCTCCGAATCCTTTTGGACAGACACCTAGTAACCCTTTTGGGTCATCGGGATTTGGCCAGACAGCTGCTCCAGCCAATAACCCTTTTGCAC CTAAACCTTTTGGGAGTCCAACCCCTTTTGGTTCGCAAACAGGGAGCTCCTTTTTTGGGGGAACTTCAACAGGTATGTTTGGTGCACCTCAAGCTTCTTC ACCTTTCCCGTCTACAACAACATTTGGGGCCTCGTCATCACCTGCTTTTGGAAGCTCAATGCCTGCTTTTGGAGCATCTAGCACTCCTGCTTTCAATAGT TCCCCCTCAACCTTTGGTGGGTCATCTGCCTTCGGTCAAAAGCCTGCTTTTGGAGGTTTTGGGTCCAGTACTACTCCGACTCCGTTTGGAAGCACAAACC AGCAATCCCAGCCTGCTTTTGGTAGCAGTTTGTTTGGTACATCAACGCCATTTGGTGCTGCATCTCAGTCTGGTTTCGGTGCTACTAGCACACCTGCATT TGGTACAACAAGCACGCCTGCATTTGGTTCCACAAGCACCCCAGCATTTGGCGCTGCAAGTACTCCGTCATTTGGTGCGACAAGCACCCCAGCATTTGGA TCGACAGCAAGCCCAGCCTTTGGTAGCACAGGATCAGCCTTTGGTGTGTCTAATACCCCAGCTTTTGGAACATCAAATACTTCTGTTTTTGGATCATCTA CTCCATCTTTCGGTGCTGCAAGCACTCAAGCATTTGGAGCTGCAAGCTCTCCTGCATTTGGGGCTTCAAATACTCAAAATTTTGGGGCATCTAGTTCTCC ATCATTTAGCTTTGCATCAACTTCTGCGTTTGGTCAGTCAACTTCTGCGTTTGGAAGCAGCCCTTTTGGAGCTCAGAGTTCTGCATTTGGTGCCCAGGCT ACAACACCAACATTTGGAAGCTCAGGCTTTGGCCAAACACAATTTGGAGCGCAGAAAGGTGGAAGTCGAGCTGTACCGTATACAACTACTGCTGACACAG ACGGCACTGGTCAAGGGGGGCAGCCGGGGAAGTTGGAGTCAATATCAGCCATGCCTGCCTATAAAGAAAAGAGCCATGAGGAGCTGAGATGGGAGGATTA TCAATTGGGAGATAAAGGTGGACCTCAGCCCTCAGGTCAACCTTCTGCGGGAATCAATTTTAGTGCACCAGCAGCACAGTCAAACCCATTTGGTTCTTCA TCTGCATTTCCTCAATCATCTGTGAATCCCTTTTCTGCTTCAACCCCATCCAATCCATTTGCTCCAAAGCCTTTTGGACAATCGCCCACCTCAACTTTCA ATTCTTCCCCTTTTGGAACTTCAACGACTGCCAACCCTTTCCAGTCGACATCATTTCCTTCCACATCAACAGGTGGATTTGGCACCACTTCTCCATCTTT GTTTGGCACATCAAACACATCAACTTTTGGTTCCACGCCTTCATTGTTTTCTTCTACTGCCCAAGGAACAACTTCCGCATTTAATCCCAGCATGGGCTTC CCCAGCAGTTCTTCTCCATTTCAGTCGACCACTCCTTCACTTGGACAAACCTCTTTATTCCCACAAACTGCCTCTTCCATTGGACCGAGTTCTGCCTCTC CTTTTGGCCAGTCAAACATTTTCAATACACCTGCTACTTCACAAAGTGGTGGCCTTTTCTCAAACACATCTTTATTTCCTTCCTCCAACACTGGAGGGTT TGGTCAGACGACGGCCTCCACCGCAGCACCTTTTCAACAGCCTCAACCTAGCTTTATGAATTTTGGTACAGCCCAAGCAGGTGGTACAAGTGGCTTTACT AGTGCATTTGGTCAGAACATTTTGGGACAGCAGCCTGTCACACAGAATTCTGTCGGTGTACTTCAAGTACCTGTGACCAATCCTTTTGGTACACTCCCAG CAATGCCACAAATTTCAATAGCACGAGCTGGAACTACACCTTCTGTTCAGTACGGGATCTCTAGCTTGCCTGTGGTTGACAAACCTGCACCTGTAAGAGT ATCTTCCTTATTGACCTCTCGGCACCTACTACAAAGGCGTATGAAGATGCCTGCCAGGAAATACTACCCGAAACATGATGGTCCCAAGGTTCCATTTTTC AGCGATGAGGAAGAATCGCCAAGCACGCCAAAAGCAGATGCTCTCTTCGTTCCCCGGGAGAACCCAAGAGCTCTAGTGATTCGCCCTGTTGACCAGTGGT CGTTAAGAGCTAATGCAGATAAAGGATCTCCTATTAAGGATGTAAATCAGAATGGCAAGTTTCTGACTCCTCCCTCCTCTCTTCCTCTGGTCGAACCAGA ATTGAAATGGAAAGTCTTAGAAGCGATGGATGGAGAGGGTGTTCCTTCCGTAAATGGTACCAGGCCCAACGGCAAAGCTAAGAACCCGGCTGAAAATGGT ATTGGCAGCAAGGAAGTGAAACAGGGCCAGAAGCTCAACAACGGAGTTCACGAAGATCATTCCAGTCAGAAAGATGAATCGTACATGAGATTTAGTGGTC ACAGAGCTGGAGAAGCAGCAATTGTTTATGAGCATGGGGCAGACATCGAGGCACTAATGCCAAAGCTACGTCGTGCAGATTACTATACAGAGCCCCGGAT TCAAGAACTGGCGGCCAAGGAAAGGGCAGAACCCGGATTTTGCCGGCGTGTGAAGGACTTTGTGGTTGGACGACGAGGGTTTGGAAGCATCAAGTTTTTG GATGAGACAGATGTGAGAAGGCTTGACCTGGATTCTCTGGTTCATTTCAACACCCGGGAAGTGATCGTCTATATGGATGACCATCATGAGAAACCGCCGA TTGGACAAGGTCTTAATAAGCCTGCTGAGGTAACTCTTCTCAACATCAAGTGCGTTGATAAAAAGACCAAGAAGGAGTTTACAGAAGGGAAGAGGGTGGA GAGGTACAAGGAAACTCTGAAGAAGAAGACAGAAGAGCAAGATGCCGAGTTTGTCTCGTACGATGCAGTGAAAGGAGAATGGAAGTTCCGGGTTAAGCAT TTCAGCAGCTACAAGCTTCTCGAGGAAGAGCAAGAGCAAGAGGAAGAAGATTGA
AA sequence Show only first row Show all	>Lus10033254 pacid=23172150 polypeptide=Lus10033254 locus=Lus10033254.g ID=Lus10033254.BGIv1.0 annot-version=v1.0 MFGSPNPFGQTPSNPFGSSGFGQTAAPANNPFAPKPFGSPTPFGSQTGSSFFGGTSTGMFGAPQASSPFPSTTTFGASSSPAFGSSMPAFGASSTPAFNS SPSTFGGSSAFGQKPAFGGFGSSTTPTPFGSTNQQSQPAFGSSLFGTSTPFGAASQSGFGATSTPAFGTTSTPAFGSTSTPAFGAASTPSFGATSTPAFG STASPAFGSTGSAFGVSNTPAFGTSNTSVFGSSTPSFGAASTQAFGAASSPAFGASNTQNFGASSSPSFSFASTSAFGQSTSAFGSSPFGAQSSAFGAQA TTPTFGSSGFGQTQFGAQKGGSRAVPYTTTADTDGTGQGGQPGKLESISAMPAYKEKSHEELRWEDYQLGDKGGPQPSGQPSAGINFSAPAAQSNPFGSS SAFPQSSVNPFSASTPSNPFAPKPFGQSPTSTFNSSPFGTSTTANPFQSTSFPSTSTGGFGTTSPSLFGTSNTSTFGSTPSLFSSTAQGTTSAFNPSMGF PSSSSPFQSTTPSLGQTSLFPQTASSIGPSSASPFGQSNIFNTPATSQSGGLFSNTSLFPSSNTGGFGQTTASTAAPFQQPQPSFMNFGTAQAGGTSGFT SAFGQNILGQQPVTQNSVGVLQVPVTNPFGTLPAMPQISIARAGTTPSVQYGISSLPVVDKPAPVRVSSLLTSRHLLQRRMKMPARKYYPKHDGPKVPFF SDEEESPSTPKADALFVPRENPRALVIRPVDQWSLRANADKGSPIKDVNQNGKFLTPPSSLPLVEPELKWKVLEAMDGEGVPSVNGTRPNGKAKNPAENG IGSKEVKQGQKLNNGVHEDHSSQKDESYMRFSGHRAGEAAIVYEHGADIEALMPKLRRADYYTEPRIQELAAKERAEPGFCRRVKDFVVGRRGFGSIKFL DETDVRRLDLDSLVHFNTREVIVYMDDHHEKPPIGQGLNKPAEVTLLNIKCVDKKTKKEFTEGKRVERYKETLKKKTEEQDAEFVSYDAVKGEWKFRVKH FSSYKLLEEEQEQEEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	0	1
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	1.4	0.7653
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	1.7	0.7351
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	10.9	0.7470
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	13.4	0.7180
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	13.4	0.7147
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	13.6	0.6564
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	19.0	0.7299
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	24.0	0.7287
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	39.5	0.6471
AT2G30480			unknown protein		Lus10019109 [exp]	39.9	0.6505

Compare expression of checked genes

Lus10033254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.