Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51980 284 / 5e-91 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G25440 281 / 5e-90 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G49200 246 / 2e-76 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 235 / 1e-71 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT1G49040 64 / 2e-10 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT3G51930 63 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 56 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G21651 56 / 5e-08 zinc ion binding (.1) AT1G47610 55 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021656 [exp] 387 / 4e-130 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 367 / 3e-123 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10021648 [exp] 359 / 1e-119 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 307 / 3e-96 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10038890 [exp] 293 / 3e-95 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032062 [exp] 239 / 1e-74 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 229 / 8e-71 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001652 [exp] 218 / 2e-68 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 213 / 2e-66 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134800 [exp] 299 / 1e-96 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 300 / 6e-96 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G137200 [exp] 296 / 3e-95 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.015G049500 [exp] 64 / 2e-10 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 63 / 3e-10 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.006G239600 [exp] 61 / 1e-09 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 61 / 1e-09 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 58 / 1e-08 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 57 / 1e-08 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G107900 [exp] 56 / 3e-08 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10033255 pacid=23172213 polypeptide=Lus10033255 locus=Lus10033255.g ID=Lus10033255.BGIv1.0 annot-version=v1.0 ATGGTGCTTCCTACGAATGTGTACCAACGCGTGAAGAGTACGACTGTGTGCCACTTCTGGAAACAGGGCAAATGCAACAAAGACCCTTGTCGATTTGTTC ACGGAGATTCACCGCCACAGCAACAACATCGTTCAGTAGTAGTGCGTTCTAATATCTACCGCCGTGCACCACCAACCTCCTCATCATCAACACGATCCGT TCAGGGAAAATGCGTGGTTGTGCAGAAACCTAAGACTGTTGAGGTTGCAACAAAAGAAAAGCCCCCTTGTGAAGGCAAATGCGTGGTTGTGCAGAAACCC AAGGTCGCTGCCGAGGTTGTAACAGAAGAGAAGCCTCCTTGTGAAATCAAAGGCGAGGTTTTGCAGAAACCCAAGGTCGCTGCTGAGGTTGTGACGGAAG AGAAGCTCCCTTGTGACGGCAAATGCGAGGTTGTGCAGAAATCCAAGGTCGCTGCTGAGGTTGCAACAGAAGAGAAGCCCCCTTGTGAAGACTGGATGTC GTCTGGCAAGTGTAGCAGAGGTGATGCCTGCCCATTCTTGCACTCCTGGTTCTATGGAGATGCTTTTTCGATGTTGGCAAGGCTTGAAGGCCACTGTAAC AATGTTTCTGGGATCGATCTTTCTTTCTGGTGGAAGACGCTTTTCTCAGCTAGTAATGATGGTATTGTGCATGCTTGGGATTGCCCCACTGGTAAGCTCA CTAGCACACTTGATGTTGGTGAGAAGATAGGCTGTTTGATCAATGGAGGTGATTGGCTATTTCTTGGATTGTCAAATTCAGTAAAGGCCATTAACACAAG ATCAAGAGCTGAATACAATCTAAGTGGACCTACTGGAGAAGTTTATGCCTTGGAGATAGGGTTGGGAGTTTTGTACGCTGCAACTCGAGATGGTATGATT GTGGCTTGGAGAGTAGATCTCAGTGTTGAGCAGCATGTCAGTCCTTTTCAGCCTCCCATATTTCTAAATGGCCATAAAAGTGCAGTTATTTGTCTGAAAT TTGGAGTTGGAAGGCTATTCTCTGGTTCAATGGATGGAACCATCATTACTTGGGATAACAAAACTCTTGAGTGCATTGAGACGACTAAGGGGCATGATGA TGCTGTGATGTCTCTTCTCTGCTATGACTCATTCCTACTATCCTGCTCTCTTGATCAGAAGATCAAAGTCTGGGCTTTGAATGAAGAGCGCATTCTGGAG GTAGTGTATACCCACGAAGATGAAGATTGTGGTGCTCTGGGTCTTTGCGGGGTAGAGAACCCAAATGGGAATGCGATCTTGCTATGCTCGTGGAACAATG ATACTGTCAGCGTATATGAGCTTCCGTCTTTCAAGAAAAGGGGTAAAATGTACTCAAAAGGAGAAGTAAGGACTATGAGAAGAGTTAATGATATATTGTT CACAGGGGATGCAACAGGGATTGTGACTGTTTGGAGATTGGCCCAACCAAGTGCAAAAGCTGTGGTGGAATCATCGTAA
AA sequence Show only first row Show all	>Lus10033255 pacid=23172213 polypeptide=Lus10033255 locus=Lus10033255.g ID=Lus10033255.BGIv1.0 annot-version=v1.0 MVLPTNVYQRVKSTTVCHFWKQGKCNKDPCRFVHGDSPPQQQHRSVVVRSNIYRRAPPTSSSSTRSVQGKCVVVQKPKTVEVATKEKPPCEGKCVVVQKP KVAAEVVTEEKPPCEIKGEVLQKPKVAAEVVTEEKLPCDGKCEVVQKSKVAAEVATEEKPPCEDWMSSGKCSRGDACPFLHSWFYGDAFSMLARLEGHCN NVSGIDLSFWWKTLFSASNDGIVHAWDCPTGKLTSTLDVGEKIGCLINGGDWLFLGLSNSVKAINTRSRAEYNLSGPTGEVYALEIGLGVLYAATRDGMI VAWRVDLSVEQHVSPFQPPIFLNGHKSAVICLKFGVGRLFSGSMDGTIITWDNKTLECIETTKGHDDAVMSLLCYDSFLLSCSLDQKIKVWALNEERILE VVYTHEDEDCGALGLCGVENPNGNAILLCSWNNDTVSVYELPSFKKRGKMYSKGEVRTMRRVNDILFTGDATGIVTVWRLAQPSAKAVVESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	0	1
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	1.0	0.8357
AT5G55220			trigger factor type chaperone ...		Lus10000783 [exp]	4.7	0.8343
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017848 [exp]	5.5	0.8054
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	6.2	0.8180
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	6.3	0.8078
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017847 [exp]	6.5	0.7859
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	8.7	0.8125
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	10.1	0.7637
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	11.0	0.8120
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	13.2	0.7630

Compare expression of checked genes

Lus10033255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.