Plant FIBer expression Database

Lus10033256 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10390 209 / 2e-57 Nucleoporin autopeptidase (.1.2)
AT1G59660 143 / 2e-35 Nucleoporin autopeptidase (.1)
AT1G63540 49 / 9e-06 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033254
[exp]
436 / 2e-141 AT1G10390 1023 / 0.0 Nucleoporin autopeptidase (.1.2)
Lus10008288
[exp]
430 / 9e-139 AT1G10390 1013 / 0.0 Nucleoporin autopeptidase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G453200
[exp]
202 / 4e-55 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2)
Potri.011G148800
[exp]
199 / 3e-54 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2)
PFAM info
Representative CDS sequence
>Lus10033256 pacid=23172139 polypeptide=Lus10033256 locus=Lus10033256.g ID=Lus10033256.BGIv1.0 annot-version=v1.0
ATGTCTGGCTCTCAGTATCGGTCATTTGTCTTTGAACAAACGCCTGCTTTTGGAGGTTTTGGGTCCAGTACTACATCTCCGTTTGGAAGCACAGACCAGG
AATCCCAGCCTGCTTTTGGTAGCAGTTTGTTTTGTTTAGCAACGCCATTTGGTGCTGCATCTCAGTCTGGTTTCGGTGCTACTAGCACGCCTGCTTTTGG
TACAACAAGCACCCCTGCCTTTAGTTCCAAAAGTACTCCATCATTTGGTGCGGCTAGCACCCCAGCATTTGGATCAACAGCAGGCCCAGCCTTTGGTAGT
ACGGGATCAGCCATTGGTGTGTCTAATGCTCCAGATTTTGGAACAAGGGCATCTTCTCGAGCTTCAAATACTTCTCTTTTTGCCTCATCAAGTCCAGCGT
GCGGCGCTGCAAGCTCTCCAGTATTCGGAGCTGCAAGCTCACCAGCATTTGCGGTTCCAAATACTCCAATTTTTGGAGGATCTAGTTGTCCACCATTTAT
CATTGCACCTACTTCTGCTTTTGGCCAGTCAACTTCTGCATTTGGAAACAGCCTCTTTGGAGCTCGGAGTTCTGCAATTGGGTCCCAGGCTCCAGCACCA
AAATTTGGAAGCTCAGGGTTTGGCCAACCACATTTTGGAGCGGAGAAAGGTGGAAGTCCAACTGTACCGTATACAACAACTGATGATACAGAAAGCACCG
GTGCATGGGGGCAGCCTTGGAAGTTGGAGTCAATATCAGCCATGCCTGCCTACAAAGAAAAGAGCCACGAAGAGCTGAGATGGGGGGATTATCAATTGGG
AGATAAAGGTGAACTAGTTCCCTTCTTTCAACCTTCAAGTTCGCCATCGTGGCCTACGTCCACTCTCAATTCTTCCCTTTTTGGAACTTCAACGACTAAC
CCTTTCCAGTCAATATCATTTCCTTCCACTGCAACAAGTGGAGTTGGCACCACTTCTCCATCTTTGTTTGGCACATCAAGCATTTCAACTATTGGTTCCA
CGCCTTCCTTGTTTACTTCTACTGCTTCCGCATTTAATCCCAGCATTTGCTTCGCCAGCAGTTCTTCTCCATTATTTCAGTCGATTACTCCTTCGCTTCG
ACAAACTGGCTCTATATTCCCACAAACTGCCTCTTCCATTGGACCGAGTTCTGCCTCTCCTTTTGGCCAGTCAAACATCATGTTCAATACCCTGGCTACT
TCACAAAGTGGTGGCCTTTTTCCAAACACTTCATCTTTATTTCCTTCAACCAACACTGGAGGATTTGGTCCGACGACTGCCTCCACCGCATCACCTTTTC
AACTGCGTCAATCTAGCTTTATCTTTGTTATGGCCCCAGCAGCTGGTACAAGTGGCTTTGGCTTTGGCTATACTGGCGCATCTGGTCAGAACATTTTTCC
ACCGCAGTATGTCTCGCCCCTTGCTCTAGTTTATCTGCCTTTTGCACAGAATTATCTCGGTGTACTTCAAGTACCTGTGGCAAATCCTTTTGGTACGCTC
CCAGAAATGCCACAAATTTCAATAGCAGGACCTGGAATTACACCAACATTTGGAAGCTCAAGCTTTAGCGAAACACAATGTGGTGAGCTGAAATGTGGAA
GTCGAGCTGTACCGTGTACAAAAACTGCTGTTGATGATGCAGAAAGCACCAATGCAGGGGGGCAGCCTAGGAAGTTGGAGTCGATATCAACCATACCTGC
CGGTAAAGAAAAGAGCGACGGGGAGCTGAAATGGGAGGATTATCAATCGGGAGATGAAGGTGAACCGCTTCTCTCTGGTCAACCTTCTGCAGGAACAGGA
TGTGTACTTTTGCAGTTGCTTCGCAGTTTCTGCAGCTGTTTCGGTGTGTAA
AA sequence
>Lus10033256 pacid=23172139 polypeptide=Lus10033256 locus=Lus10033256.g ID=Lus10033256.BGIv1.0 annot-version=v1.0
MSGSQYRSFVFEQTPAFGGFGSSTTSPFGSTDQESQPAFGSSLFCLATPFGAASQSGFGATSTPAFGTTSTPAFSSKSTPSFGAASTPAFGSTAGPAFGS
TGSAIGVSNAPDFGTRASSRASNTSLFASSSPACGAASSPVFGAASSPAFAVPNTPIFGGSSCPPFIIAPTSAFGQSTSAFGNSLFGARSSAIGSQAPAP
KFGSSGFGQPHFGAEKGGSPTVPYTTTDDTESTGAWGQPWKLESISAMPAYKEKSHEELRWGDYQLGDKGELVPFFQPSSSPSWPTSTLNSSLFGTSTTN
PFQSISFPSTATSGVGTTSPSLFGTSSISTIGSTPSLFTSTASAFNPSICFASSSSPLFQSITPSLRQTGSIFPQTASSIGPSSASPFGQSNIMFNTLAT
SQSGGLFPNTSSLFPSTNTGGFGPTTASTASPFQLRQSSFIFVMAPAAGTSGFGFGYTGASGQNIFPPQYVSPLALVYLPFAQNYLGVLQVPVANPFGTL
PEMPQISIAGPGITPTFGSSSFSETQCGELKCGSRAVPCTKTAVDDAESTNAGGQPRKLESISTIPAGKEKSDGELKWEDYQSGDEGEPLLSGQPSAGTG
CVLLQLLRSFCSCFGV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10390 Nucleoporin autopeptidase (.1.... Lus10033256
[exp]
0 1
AT5G01930 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl ... Lus10014184
[exp]
6.6 0.9435
AT2G03500 GARP Homeodomain-like superfamily p... Lus10023857
[exp]
8.7 0.9425
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10028243
[exp]
8.8 0.9427
AT4G18550 AtDSEL Arabidopsis thaliana DAD1-like... Lus10013932
[exp]
8.9 0.9430
Lus10028069
[exp]
10.9 0.9385
AT5G42930 alpha/beta-Hydrolases superfam... Lus10042648
[exp]
11.0 0.9400
AT3G19540 Protein of unknown function (D... Lus10028070
[exp]
11.4 0.9369
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10007243
[exp]
11.6 0.9414
AT3G54100 O-fucosyltransferase family pr... Lus10021119
[exp]
14.8 0.9366
AT4G03230 S-locus lectin protein kinase ... Lus10031603
[exp]
15.0 0.9186

Lus10033256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.