Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008291 [exp] 409 / 9e-142 AT5G19790 106 / 3e-26 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453100 [exp] 55 / 3e-08 AT5G19790 71 / 5e-14 related to AP2 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033259 pacid=23172111 polypeptide=Lus10033259 locus=Lus10033259.g ID=Lus10033259.BGIv1.0 annot-version=v1.0 ATGGGTGGCGGAGATCAAGGATTCTCTTCAGAAAGTTCGCCTCTGGCTCGGAACATTCGACACCGCCGAGGACGCTGCCCGCGCCCACGACGACCTGCCC GGGGCTACGACGACGCGGCTCGGGCCTTGCGTGGAGATAACGCCCGAACCAATTTCGAATTGACTCACCCGACCTCCGGAGGCGGCGGCCGGGGAGGACT TTCCGACAACATCGAGCCTTTCTCGTTTGAGGAGGTTTGTGGGACCGGGAGTGAGGCTGCTGACGGGATTCTCGGGGCCCTCAAGGCTAAGCTTCTCGAC GGGAAAGGACTTCGGCTTAGTAACAATAACACAACCAGCGTGGGCGCCAGCTCATCAGGTGTGCAATTACCAATCAACCATCGCGGGGGTAAAGACAAGG GTACCGTTGATAACGGCAACGAGGGTAAAAAGGTAAATAACAACCCGACGACTCAGGTTGGTAGACCACCGAAGCCTCCTCCCAAACCTAGCCAGGACGC TCGGATGGATGGCATGGATCATCATGCCATGCTGAGACATCATCATCATCATCAACAACAACAACAACAACAAGAGAATTACCAAATTGCCCAACCTCAA TTCCATCAAGAAATTGATCAAGCAGGAGTACTCACCAATCTCAATGATTCAAGTTATTGGGAGAGGTCCAAGGTTATGGTGTCTCCTTGGCACGAGATCG CCGCAGCTACGGCGAACAACAACGGAGGATGGACCGACCATAATCAACAACCACCGCCAGCTGTCACATCGTATGAGCATCATCAAATGATGGATCAGTG GCCACAGCAGCACCACCACAACGTTAATTCAATAGACACGACGGGTGCGAATTTGTTCACCACTACGTGCTCGACGTGGCCGACGTCAATTCACGATCAA TCGGGCATTCCGTCTTCGTCGTCGTTCATGAAATCGGACATAAATCTAGCGACGACGAGCAACGTCAACGTTAATGTTAACAATAATCATCATCACAACC AAGGGGGGTGGATGCCGTCATTGACGGAGCAACAGTTTATGCAAACGGAGATGGGTAATACTGGATGGACGCCTCCACCTCAGACTGGTGGTGGGTCCGG TTGGGACCCTCTTCTCTACGTGTCCTCGGTGCTAGGCTGA
AA sequence Show only first row Show all	>Lus10033259 pacid=23172111 polypeptide=Lus10033259 locus=Lus10033259.g ID=Lus10033259.BGIv1.0 annot-version=v1.0 MGGGDQGFSSESSPLARNIRHRRGRCPRPRRPARGYDDAARALRGDNARTNFELTHPTSGGGGRGGLSDNIEPFSFEEVCGTGSEAADGILGALKAKLLD GKGLRLSNNNTTSVGASSSGVQLPINHRGGKDKGTVDNGNEGKKVNNNPTTQVGRPPKPPPKPSQDARMDGMDHHAMLRHHHHHQQQQQQQENYQIAQPQ FHQEIDQAGVLTNLNDSSYWERSKVMVSPWHEIAAATANNNGGWTDHNQQPPPAVTSYEHHQMMDQWPQQHHHNVNSIDTTGANLFTTTCSTWPTSIHDQ SGIPSSSSFMKSDINLATTSNVNVNVNNNHHHNQGGWMPSLTEQQFMQTEMGNTGWTPPPQTGGGSGWDPLLYVSSVLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033259 [exp]	0	1
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10021422 [exp]	2.2	0.9269
AT5G02640			unknown protein		Lus10038485 [exp]	2.4	0.9250
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	5.3	0.9299
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	9.1	0.9304
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	13.1	0.9286
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	16.2	0.9140
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10042281 [exp]	17.3	0.8719
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	17.6	0.9140
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	21.0	0.9120
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	22.3	0.9271

Compare expression of checked genes

Lus10033259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.