Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33250 545 / 0 Protein of unknown function (DUF604) (.1) AT5G41460 336 / 1e-111 Protein of unknown function (DUF604) (.1) AT4G23490 334 / 1e-110 Protein of unknown function (DUF604) (.1) AT4G11350 323 / 7e-107 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G07850 313 / 2e-102 Protein of unknown function (DUF604) (.1) AT2G37730 308 / 1e-100 Protein of unknown function (DUF604) (.1) AT1G01570 303 / 5e-99 Protein of unknown function (DUF604) (.1) AT4G15240 289 / 2e-93 Protein of unknown function (DUF604) (.1) AT4G00300 281 / 2e-87 fringe-related protein (.1.2) AT1G05280 269 / 5e-86 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033262 [exp] 803 / 0 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 780 / 0 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 344 / 1e-114 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 334 / 1e-110 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 332 / 9e-110 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 315 / 3e-103 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10027153 [exp] 280 / 6e-90 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 268 / 6e-86 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 267 / 3e-85 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147300 [exp] 600 / 0 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 580 / 0 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 355 / 3e-119 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 338 / 3e-112 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 338 / 3e-112 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 332 / 3e-110 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 313 / 7e-103 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 307 / 1e-100 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 304 / 3e-99 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 294 / 2e-95 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10033260 pacid=23172101 polypeptide=Lus10033260 locus=Lus10033260.g ID=Lus10033260.BGIv1.0 annot-version=v1.0 ATGCGGGGACACGTTTGGGTCGAAGAGAAGCTCCCCGCCGTTGAATCGGACGAATCGCTGCCTCCGATCATGGTATCTGAGGACACGTCGCGTTTCCGTT ACACGCATCCCACGGGCCATCCTTCTGGACTTCGGATCTCTAGGATCCTCGCCGAGAGCTTCCGCCTCGGACTCCCCGATGTACGGTGGTTCGTCCTCGG AGACGACGACACGATTTTCAACCCTGATAATTTGGTTGCGGTTCTCAGTAAGTATGATTCCTCTGAGATGGTTTATATTGGATCTCCTTCCGAGAGTCAT TCTGCCAACAACTATTTCAGCCATTCCATGGCCTACGGCGGCGGGGGGATCGCCATTAGCCGTCCGCTTGCCGAGGCTCTCTCCAACATTTTAGATGATT GTATAGATAGATACCATGGCTTCTACGGCAGCGACGATCGACTCCATGCTTGCATTTCCGAGCTGGGAGTTCCTTTGTCAAGAGAGCATGGATTCCACCA GTTTGACATCAGAGGCAGTGCACTTGGTCTACTATCTGCCCACCCGATTGCACCCTTTGTCTCGATTCACCATGTCGAAGCTATTGATCCACTTTACCCG GGTCTAACCACGCTAGAGAGTCTCAGGCTCTTCACAAAGGCCATGAGTCTTGATCCCACTAGCTTCTTGCAGAGATCGATTTGCTACGACCATGTTCGCC ACCTTTCCTTTGTTGTCTCGATTGGGTATGTTGTACAGGTGTTCCCTGGCATTGTGCTTCCGCGTGTTCTTGATCTCTCAGAGAAGACCTACTCGGCGTG GAATGGTAAGACTAAGAGGAACGAGTTCGATATGGATACCCGAGATCCTTACAAATCTTATTGCAAGAGGCCTGTCTTCTTTTTCTTGAAAGATGCGGTT AAACAGGACAACGATACGTTGGGGACGTACCAACGAGCTAAGCTGAATGATGATTTGAAAAGAAGAGTCTTTTGCTTTCCGAAATCCAGTCCTCTCCCTC ATGTGGCTAGCATTCGCGTGTTGGCTCGTCCATTGAGGAAGAATTGGCACCTGGTTCCTCGACGCCTCTGTTGCAGACTGGACTCTGCAAGTAATGAAAT AGTTGTTGCAGAGTGTGAAAAGGGATCGCAAGGTTCTGTCACAGATTCGACACAAGTGATTAGCAGACCTTCATGA
AA sequence Show only first row Show all	>Lus10033260 pacid=23172101 polypeptide=Lus10033260 locus=Lus10033260.g ID=Lus10033260.BGIv1.0 annot-version=v1.0 MRGHVWVEEKLPAVESDESLPPIMVSEDTSRFRYTHPTGHPSGLRISRILAESFRLGLPDVRWFVLGDDDTIFNPDNLVAVLSKYDSSEMVYIGSPSESH SANNYFSHSMAYGGGGIAISRPLAEALSNILDDCIDRYHGFYGSDDRLHACISELGVPLSREHGFHQFDIRGSALGLLSAHPIAPFVSIHHVEAIDPLYP GLTTLESLRLFTKAMSLDPTSFLQRSICYDHVRHLSFVVSIGYVVQVFPGIVLPRVLDLSEKTYSAWNGKTKRNEFDMDTRDPYKSYCKRPVFFFLKDAV KQDNDTLGTYQRAKLNDDLKRRVFCFPKSSPLPHVASIRVLARPLRKNWHLVPRRLCCRLDSASNEIVVAECEKGSQGSVTDSTQVISRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33250			Protein of unknown function (D...		Lus10033260 [exp]	0	1
AT1G33250			Protein of unknown function (D...		Lus10033262 [exp]	1.0	0.9796
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032321 [exp]	4.6	0.9501
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	7.3	0.9528
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	13.1	0.9493
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	14.0	0.9411
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	15.9	0.9399
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	17.4	0.9364
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	19.4	0.9402
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	21.7	0.9328
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10018468 [exp]	23.7	0.9321

Compare expression of checked genes

Lus10033260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.