Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33230 306 / 6e-104 TMPIT-like protein (.1) AT4G10430 303 / 9e-103 TMPIT-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033263 [exp] 558 / 0 AT4G10430 380 / 2e-131 TMPIT-like protein (.1.2.3) Lus10008294 [exp] 424 / 5e-150 AT4G10430 464 / 2e-164 TMPIT-like protein (.1.2.3) Lus10010151 [exp] 327 / 1e-111 AT4G10430 501 / 4e-179 TMPIT-like protein (.1.2.3) Lus10017356 [exp] 263 / 8e-87 AT4G10430 429 / 4e-151 TMPIT-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147500 [exp] 329 / 1e-112 AT1G33230 486 / 4e-173 TMPIT-like protein (.1) Potri.001G454400 [exp] 321 / 8e-110 AT1G33230 526 / 0.0 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [flax] [poplar] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Lus10033261 pacid=23172053 polypeptide=Lus10033261 locus=Lus10033261.g ID=Lus10033261.BGIv1.0 annot-version=v1.0 ATGATTTCCGATGGGGAAGCAGCTGCGTTTCTTCCTTCCAAGGGCCATGGGAGATTTCTCAGGATGTTTCTGGGTCCTATTAACGTACAAGCCTCTCGTA AAGACGTCCAATTGAAGGTTAAAGAAGAGTACAACAGTTATAGGGATAGAACTGCCCTTCTATTTCTGCTGTTCCCATCAGCTCTACTGATTATGAGGTC TTGGGTGTGGGATGGGTGTTTGCCAGCGTTCCCTGTTCAATTGTATCAGTCATGGTTATTATTCCTCTATACCGGGTTGGCGTTGCGAGAAAACATACTG AGGGCCAATGGAAGTGATATTCGTCCCTGGTGGATCTACCATCACTATTGTGCTATGATAATGGCTCTAGTAAGCCTTACATGGGAGATAAAAGGACAGC CCAATTGCGCCCAGAAACAGTTTCCAGAGAGGGGTAGAACTCTTCTTGCAATGGGCTATGATGCAAGGAGTCGCAATGCTTTTACAGAACAGATACCAGC GACAGAGACTTTACACTCGAATTGCATTGGGGAAGGTATTCCAATGCCAGCAAAGAGAATGGATGTAGTATGGGGAGAAACTGCTGGTGTAGATGGCCAG TTGTGGTTGTTGGCACCTATTCTCTTTATTTTACAGGGGTTTGAGGCGTATGTTGGATTGCAGTTGCTGAGAACTGCATTCGCGAGGGTCGTCACTGAGT GGCAGGTTACAGTTCTTCCTTCCTCATGTAATATTCTGTGGAATCCTGTTGGTGTTCATGGCTGCTGGAAATTTCTCAAACACGGTACAGACACTGCTGG TGAAATCGAGGTTCAAAGCAAAGATGAAACTGAGTAA
AA sequence Show only first row Show all	>Lus10033261 pacid=23172053 polypeptide=Lus10033261 locus=Lus10033261.g ID=Lus10033261.BGIv1.0 annot-version=v1.0 MISDGEAAAFLPSKGHGRFLRMFLGPINVQASRKDVQLKVKEEYNSYRDRTALLFLLFPSALLIMRSWVWDGCLPAFPVQLYQSWLLFLYTGLALRENIL RANGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQFPERGRTLLAMGYDARSRNAFTEQIPATETLHSNCIGEGIPMPAKRMDVVWGETAGVDGQ LWLLAPILFILQGFEAYVGLQLLRTAFARVVTEWQVTVLPSSCNILWNPVGVHGCWKFLKHGTDTAGEIEVQSKDETE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33230			TMPIT-like protein (.1)		Lus10033261 [exp]	0	1
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	1.0	0.9030
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	7.9	0.8617
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	8.1	0.8921
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	13.0	0.8589
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	13.7	0.8822
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	17.3	0.8679
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	20.2	0.8712
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	20.4	0.8757
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	26.1	0.8413
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	26.1	0.8635

Compare expression of checked genes

Lus10033261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.