Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10430 346 / 3e-118 TMPIT-like protein (.1.2.3) AT1G33230 337 / 9e-115 TMPIT-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008294 [exp] 560 / 0 AT4G10430 464 / 2e-164 TMPIT-like protein (.1.2.3) Lus10033261 [exp] 558 / 0 AT1G33230 327 / 3e-112 TMPIT-like protein (.1) Lus10010151 [exp] 422 / 2e-147 AT4G10430 501 / 4e-179 TMPIT-like protein (.1.2.3) Lus10017356 [exp] 356 / 9e-122 AT4G10430 429 / 4e-151 TMPIT-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147500 [exp] 379 / 1e-130 AT1G33230 486 / 4e-173 TMPIT-like protein (.1) Potri.001G454400 [exp] 369 / 4e-127 AT1G33230 526 / 0.0 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [flax] [poplar] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Lus10033263 pacid=23172169 polypeptide=Lus10033263 locus=Lus10033263.g ID=Lus10033263.BGIv1.0 annot-version=v1.0 ATGGACGCCGGCCGAAATTCTACGCCGGATGAATCGGCGAGCAACGTGGAACAAGAGGTGGGAAGAGTAGTGGAAGAGGCGAAGCAGCTTCAGGAATCGG CTGCCTCTCACATCCATACTTCCTCCAACTACGAGCAATCGCTCCGCCAACGCGCTAACTCCGTCGACTCCTCAATCCACCGCTGCCGTTCTCTTCTTCA CTCCCTCGTCTCTCGCCGCCTCATCGATGCCAAGCTCTCTGACAAGCTGGAGGAGGAGTTGCAGAGAGCTAAATCTCTCATTTCCGATGGGGAAGCAGCT GCTTTTCTTCCTTCCAAGGGCCATGGGAGATTTCTCAGGATGTTTCTGGGTCCTATTAACGTACAAGCCTCTCGTAAAGACGTCCAATTGAAGGTTAAAG AAGAGTACAACAGTTATAGGGATAGAACTGCCCTTCTATTTCTGCTGTTCCCATCAGCTCTACTGATTATGAGGTCTTGGGTGTGGGATGGGTGTTTGCC AGCGTTCCCTGTTCAATTGTATCAGTCATGGTTATTATTCCTCTATACCGGGTTGGCGTTGCGAGAAAACATACTGAGGGCCAATGGAAGTGATATTCGT CCCTGGTGGATCTACCATCACTATTGTGCTATGATAATGGCTCTAGTAAGCCTTACATGGGAGATAAAAGGACAGCCCAATTGCGCCCAGAAACAGTTTC CAGAGAGGGGTAGAACTCTTCTTGCAATGGGCTATGATGCAAGGAGTCGCAATGCTTTTACAGAACAGATACCAGCGACAGAGACTTTACACTCGAATTG CATTGGGGAAGGTATTCCAATGCCAGCAAAGAGAATGGATGTAGTATGGGGAGAAACTGCTGGTGTAGATGGCCAGTTGTGGTTGTTGGCACCTATTCTC TTTATTTTACAGGGGTTTGAGGCGTATGTTGGATTGCAGTTGCTGAGAACTGCATTCGCGAGGGTCGTCACTGAGTGGCAGGTTACAGTTCTTCCTTCCT CATGTAATATTCTGTGGAATCCTGTTGGTGTTCATGGCTGCTGGAAATTTCTCAAACACGGTACAGACACTGCTGGTGAAATCGAGGTTCAAAGCAAAGA TGAAACTGAGTAA
AA sequence Show only first row Show all	>Lus10033263 pacid=23172169 polypeptide=Lus10033263 locus=Lus10033263.g ID=Lus10033263.BGIv1.0 annot-version=v1.0 MDAGRNSTPDESASNVEQEVGRVVEEAKQLQESAASHIHTSSNYEQSLRQRANSVDSSIHRCRSLLHSLVSRRLIDAKLSDKLEEELQRAKSLISDGEAA AFLPSKGHGRFLRMFLGPINVQASRKDVQLKVKEEYNSYRDRTALLFLLFPSALLIMRSWVWDGCLPAFPVQLYQSWLLFLYTGLALRENILRANGSDIR PWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQFPERGRTLLAMGYDARSRNAFTEQIPATETLHSNCIGEGIPMPAKRMDVVWGETAGVDGQLWLLAPIL FILQGFEAYVGLQLLRTAFARVVTEWQVTVLPSSCNILWNPVGVHGCWKFLKHGTDTAGEIEVQSKDETE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	0	1
AT1G33230			TMPIT-like protein (.1)		Lus10033261 [exp]	1.0	0.9030
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	2.6	0.8706
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	3.5	0.8714
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	5.0	0.8729
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	6.6	0.9009
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	9.2	0.8573
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	9.2	0.8918
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	10.8	0.8584
AT5G11700			unknown protein		Lus10011144 [exp]	14.4	0.8614
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	16.2	0.8873

Compare expression of checked genes

Lus10033263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.