Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43130 291 / 2e-85 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2) AT1G27720 251 / 6e-72 TAF4b TBP-associated factor 4B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008297 [exp] 1439 / 0 AT5G43130 448 / 3e-144 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10018701 [exp] 1110 / 0 AT5G43130 596 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10007763 [exp] 1106 / 0 AT5G43130 576 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10038047 [exp] 190 / 1e-54 AT5G43130 145 / 1e-39 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119900 [exp] 654 / 0 AT5G43130 634 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Potri.014G018000 [exp] 630 / 0 AT5G43130 605 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain CL0012 [flax] [poplar] Histone PF05236 [flax] [poplar] TAF4 Transcription initiation factor TFIID component TAF4 family
Representative CDS sequence Show only first row Show all	>Lus10033265 pacid=23172130 polypeptide=Lus10033265 locus=Lus10033265.g ID=Lus10033265.BGIv1.0 annot-version=v1.0 ATGGACCCCTCGATAATGAAGCTCCTCGAGGAAGACGAGGCAGGGGATGAAACAATGCATTCCGGTGCTGACGTCGAGGCTTTCCAGGCTGCTCTCAATC GGGACATCGAAGGTGACAAAAAACCCACTCCCCAGACGCATGATTCAGCTTTTACGAATGAAGGGAACCAAGATTCGTCTCAGCCGCTTCAAAGCTGGCC GTCAATTGGACAAGATGGAATTCCAGCGGGTCCAAGCAATCAGGGGCTACTTAATTTATCACATGCACAACAGTTATCACACCAACAACAGCAAACGTCT ATGGTGCTCGATCAACGCTCATCTGTAGCTGAGAAACAGCAGCAACTTAATGATGTGTCACAGGGACAAAATCACACTCCAACGATACATCAAAACCAAC CCCAAGACAATCTTCAACAGGTAAAGGTGGAACAGGCCCTTACTCAAACTCCCGGGACTACTGTGATTTCAATGTCTGATAAAAGTCCTGCTCCAATATC TGAGCCTGGGAAATCACAAAACCCTGCTGCTGAATCCCAGTACCCGAAGTTCCCTAGGATGCCCCAACAAATGACAGGCACAGAACCGGTCGTGAGTCCA AATAATCAGGGAAAGCAAATACCATTTGTGATGTTGTTCCCTGCCTTAAAACCCCATCTTGATAAGGACAAAGAGATGCAGCTCGGGATCATCTTCAATA AACTAAAGAGAAATGAAATCCCAAAAGATCAATTTGTCAGGCATTTGAAGAATATCGTAGGGGATCAAGTGCTGAAGCTGGCAATTTCTCAGTGGCAATC ACAGCATGGACCCAAACAATCCCAGTTACAGTCTCAAGCTTTAGCTCGTCAACAAAATGCCAGGATACCCACCAGTTCTAATCCCTCTCAACTTCCTGTT GCCCATCCATTTGCTCCTCATCAGAAGGGACCAAGTACTTCTCCAGACACGGCTTACAATGCTCATTCATCAGTCAAACCGCAGGCTGATGGTTCAGCTC ATGTTCTTACCATGACCGGTAATCCCAAAACCCAACAAGTTGTTTCTCATGCAGTCAACTTTAGCCGAATGACTTCACCCAGTGCAAACATAGTCAACCA ACATAGAGATTCCTCTTCAGTTCCAACCCAAGGACTCAACAAGCAAAACCAACAACATTCACACTTTCCACAGACTTCCTTTCCCATGTATGGTGGTACT GGAAGTAATTTCCCCACATATTCTGGTACAGCAAAAAATGCTTCAGGCGCATCTATGAATCCACATCATCAAGGAATTGGCATAAATCAAGTAGGAAAAC CTAGCCAGGCAATGAGCACCCTCAATAGTGCCCCTATGTCTCCTTATCCTCCTAGCAAGACAACATTGCAGCAAAATCCAGTTCCTTGGCAAGCATCAAC AAACAAAGACCAAAGTCGCACCCCATTTTCTCCTATGAATTCTGTAAAACAGGATGTTGTTGAGCGGGCTGGTGAGCAGTCACAGAAACCGCAGTTTGGT AACCATCGTGAGTTATCTGCTGGTGCTGCGCAAGGAAACACAAGTTTGGCGAGTTTCAAAGATGATTCAGATAAGCCTCCTTCAAGTGTTGGTTCCTTGA TATCCTCTGATACTGCACGCTCAAATTTAGCTGCCCTTTCCAACCCGACTCAGTTGGACCATAATACTCAGGCTGCCTCCAGGATTCCTCCCTCTTCTGC AGCCCCGAATGCAAGAAATCCCCCCAAGAAACCTTCTGTTGGGCAAAAAAAGCCACTAGAAGCTCTTGGATCTTCACCGCCAGCAGCAAGTAAGAAGCAG AAGGTTTCTGGTGCATTTTTTGATTCGAGCATTGAACAACTAAATGATGTCACTGCAGTCAGTGGAGTTGATCTTAGGGAAGAGGAAGAACAGTTATTCT CTGCGACCAAGGAGGACGGTCGAGTTTCTGAAGCATCTAGAAGAGTTGTACAAGAAGAAGAAGAGAGGCTGCTTTTGCAGAAAACTCCTCTTCAGAAAAA AGTGGCTGAGATCATGGTCAAGTGTGGTCTGAAGAATTTCAGCAGTGATGTCGCAAAATGCTTGTCCTTGACTGCATTTCTACAGAGGATTGACTCAGAG AAGTCCAGGCACAGGACAGTAGTTACCTCTGATGTCCGGCAACAACTTATGACAATGAACCAGCACGCTAAGTCTGAATGGGAGAAAAAACAGGCCGAAG CAGAAAAGCTCCGGAGAGTAAATGAACCCGAGGCTGATGGTGGATCTGAAGCTGACAGGGACAAAGATGATGCGAAAGGAAAAGCCAGCAAGGTGAACAA AGAGGAGGATGACAAAATGAGAACAAACGCTGCAAATGTTGCTGCAAGAGCTGCTGTTGGGGGAGATGACATGTTGTCGAAATGGCAACTCATGGCCGAG CAAGCTCGGCAGAAACGTGAAGGGGGTCCAGATTCTGCATCGTCTTCTCAATTCGTGTCAGATGGAAGTCATAAGCCTCAGACGTTGTCTGGAAGGAACA ACAATCAAGATGGACAAAAGAACTCTAGTTCTGCATCCTGGAGTGGTAGAAACTTTGGGAGGAACAGCCGAGTAGCAGCTCAGTTGAGGGAGGATCGGAC TTTATCTATCAAGGATGTGATTGCAGTGATGGAACGAGAGCCCCAATTGTCGAAGTCTACGTTGATTTATAAACTCTATGAGAGGATTCGGTTGGATCGG CCACCCGAATGA
AA sequence Show only first row Show all	>Lus10033265 pacid=23172130 polypeptide=Lus10033265 locus=Lus10033265.g ID=Lus10033265.BGIv1.0 annot-version=v1.0 MDPSIMKLLEEDEAGDETMHSGADVEAFQAALNRDIEGDKKPTPQTHDSAFTNEGNQDSSQPLQSWPSIGQDGIPAGPSNQGLLNLSHAQQLSHQQQQTS MVLDQRSSVAEKQQQLNDVSQGQNHTPTIHQNQPQDNLQQVKVEQALTQTPGTTVISMSDKSPAPISEPGKSQNPAAESQYPKFPRMPQQMTGTEPVVSP NNQGKQIPFVMLFPALKPHLDKDKEMQLGIIFNKLKRNEIPKDQFVRHLKNIVGDQVLKLAISQWQSQHGPKQSQLQSQALARQQNARIPTSSNPSQLPV AHPFAPHQKGPSTSPDTAYNAHSSVKPQADGSAHVLTMTGNPKTQQVVSHAVNFSRMTSPSANIVNQHRDSSSVPTQGLNKQNQQHSHFPQTSFPMYGGT GSNFPTYSGTAKNASGASMNPHHQGIGINQVGKPSQAMSTLNSAPMSPYPPSKTTLQQNPVPWQASTNKDQSRTPFSPMNSVKQDVVERAGEQSQKPQFG NHRELSAGAAQGNTSLASFKDDSDKPPSSVGSLISSDTARSNLAALSNPTQLDHNTQAASRIPPSSAAPNARNPPKKPSVGQKKPLEALGSSPPAASKKQ KVSGAFFDSSIEQLNDVTAVSGVDLREEEEQLFSATKEDGRVSEASRRVVQEEEERLLLQKTPLQKKVAEIMVKCGLKNFSSDVAKCLSLTAFLQRIDSE KSRHRTVVTSDVRQQLMTMNQHAKSEWEKKQAEAEKLRRVNEPEADGGSEADRDKDDAKGKASKVNKEEDDKMRTNAANVAARAAVGGDDMLSKWQLMAE QARQKREGGPDSASSSQFVSDGSHKPQTLSGRNNNQDGQKNSSSASWSGRNFGRNSRVAAQLREDRTLSIKDVIAVMEREPQLSKSTLIYKLYERIRLDR PPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	0	1
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	1.7	0.8819
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	4.9	0.8818
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	7.7	0.8662
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	8.8	0.8557
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	14.1	0.8557
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	14.7	0.8686
AT3G04160			unknown protein		Lus10021983 [exp]	14.7	0.8090
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	17.3	0.8629
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	20.5	0.8815
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10024652 [exp]	22.4	0.8024

Compare expression of checked genes

Lus10033265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.