Plant FIBer expression Database

Lus10033266 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38120 414 / 2e-132 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008299
[exp]
1032 / 0 AT4G38120 995 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G454200
[exp]
585 / 0 AT4G38120 1032 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10033266 pacid=23172064 polypeptide=Lus10033266 locus=Lus10033266.g ID=Lus10033266.BGIv1.0 annot-version=v1.0
ATGTCGGGTTCCTCTTCAGCAGTAAGGGCCTGGAGGACTGCCTTTTTAACACTCCGAGACGAAACCCTTACGAGCAGCCCTAAATCGAAGTCCATTACCC
AACTTCTCAATGATCTCATTTTCTCAAGTTCCGGGGCACTCATCTCTGCCGCCCCTGACCTTCCTCCTCACGAGGTTACCTCTGATGTACTGTTCCTCAT
GGAATTGGCTACAAGTTCTCCAAGCGGGCAAGATGTGTCGCCAGTTTTTGCTTATGTTTCCTCTTTGGTGCATGATATCTGCAAGCGTCAATGTGTTCCG
CTTCAACTGAATTCTTCTTCTTGGGTTTCTGTTCTCAACTGTTTCTCTACCATGGTGGAATTCTTCCTTGCCCACCCTGGTTGCGAACCTCAATTCCTGT
CTAAAGCTTCACAAATCGGTCATGCTTTAGATTGCTTGGGGACGGTTAGATATCTTGCCTCTGTCTATCGACACAAAAGTGTGCTATCAGATGATGTGCA
CTTAACAAAGTTTCTTATTGCCATAATTGAAAATTCTCGTGGTCCGTGCTTGTTGTCATCTTACATAAGCCCCGGCAAAAATGTTGCTGCCTCAAGTGGC
CATAGATTCTCGAAATGCAGTAACTTATGGGAACTTCAAACAGCTGCATTTGTTTTGCTAAGTGAAACATTCACAAAATCCGGGCCTTCGTTCCCCACTG
ATATTTGGCAATCTGCTATTGAGGTGACTAGGAAAGTGATGGACGCCTTGGTGTCTCAAGGATTCCTTGTTGAGGGTGCTCCTGCGTCAAGGTTTTATGC
TGCTCTTCTTGGTTTTCTACATCTGCTTCTTACCAATGCGAAGGGTTCCCATAATGACCATGTTCCTGCTTTTGTGGCAACTTTACGAATGTTCTTCACA
TATGGCCTCCCTCAATCCAAATTCTCCAGTAATCTTGAAACACTCAAGAATGATGCTAGCTTGACTGCTGGTAAATTGATTTCAGACGAAACTAAGAAAG
AGAATAATCCATATCGCCCTCCACACTTGCGTAGGAAGGGAACTGTAAATGGGAAGCAGTGTAAAGCTCAGGGATTACCTTGTTCCACTAGCCAAGAATC
TTGTGCCATGGAACTTATTTCGTCAGATTCAGATTATAGTGACAGTGATGCATCTATTAATGAGAATGACACTATTCAAAGTTCGAAGGTCAGGACTGCT
GCCATAGTTTGTTTACAAGATCTTTGTCAAGCTGATCCCAAGTCATTTACCGCCCAGTGGACACTGATTTTGCCTACAACTGACATACTAGAACCAAGGA
AATTCGAAGCTACTCTGTTGACTTGCTTGCTATATGATCCTCATATAAAGGTGCGGATGGCATCTGCATCCACTCTGGCTGTCATGTTTGCCGGCCCTTC
ATCTGTTTTCCTGCAAGTAGCTGAGTACAAAGAGTCTAGCAAGTTTGGATCTTTTATGGCCCTGTCAAGCTCACTTGGACGGATACTGATGCAACTTCAT
GCTGGCCTGCTTCACTTAATAAAGCAAGAAACTCACAGTAGATTGCTAGCATCTTTGTTCAAGATTCTTGTGCTTTTGATTTCTGCTACACCGTACTCGA
GAATGCCAACTGAGTTGTTGCCCAAGATAGTTACATCTCTTATGGAAAGGATGGAACATGGATTCCTTGTCAAGGGCGACCAAAGTAGTTTGTTGGTCAG
TGTGCTTTATATGTAA
AA sequence
>Lus10033266 pacid=23172064 polypeptide=Lus10033266 locus=Lus10033266.g ID=Lus10033266.BGIv1.0 annot-version=v1.0
MSGSSSAVRAWRTAFLTLRDETLTSSPKSKSITQLLNDLIFSSSGALISAAPDLPPHEVTSDVLFLMELATSSPSGQDVSPVFAYVSSLVHDICKRQCVP
LQLNSSSWVSVLNCFSTMVEFFLAHPGCEPQFLSKASQIGHALDCLGTVRYLASVYRHKSVLSDDVHLTKFLIAIIENSRGPCLLSSYISPGKNVAASSG
HRFSKCSNLWELQTAAFVLLSETFTKSGPSFPTDIWQSAIEVTRKVMDALVSQGFLVEGAPASRFYAALLGFLHLLLTNAKGSHNDHVPAFVATLRMFFT
YGLPQSKFSSNLETLKNDASLTAGKLISDETKKENNPYRPPHLRRKGTVNGKQCKAQGLPCSTSQESCAMELISSDSDYSDSDASINENDTIQSSKVRTA
AIVCLQDLCQADPKSFTAQWTLILPTTDILEPRKFEATLLTCLLYDPHIKVRMASASTLAVMFAGPSSVFLQVAEYKESSKFGSFMALSSSLGRILMQLH
AGLLHLIKQETHSRLLASLFKILVLLISATPYSRMPTELLPKIVTSLMERMEHGFLVKGDQSSLLVSVLYM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G38120 ARM repeat superfamily protein... Lus10033266
[exp]
0 1
AT4G27060 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOL... Lus10019616
[exp]
3.7 0.9324
AT3G63460 EMB2221 transducin family protein / WD... Lus10005323
[exp]
4.0 0.9411
AT4G27910 SDG16, ATX4 SET domain protein 16 (.1) Lus10019026
[exp]
4.6 0.9395
AT1G74580 Pentatricopeptide repeat (PPR)... Lus10000909
[exp]
6.9 0.9373
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10001859
[exp]
6.9 0.9462
AT1G27595 unknown protein Lus10028229
[exp]
7.7 0.9340
AT3G07100 AtSEC24A, SEC24... ENDOPLASMIC RETICULUM MORPHOLO... Lus10013101
[exp]
10.9 0.9369
AT5G59900 Pentatricopeptide repeat (PPR)... Lus10004570
[exp]
14.0 0.9227
AT3G08850 ATRAPTOR1B, RAP... HEAT repeat ;WD domain, G-beta... Lus10014157
[exp]
14.0 0.9372
AT1G27590 unknown protein Lus10007229
[exp]
14.1 0.9265

Lus10033266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.