Plant FIBer expression Database

Lus10033267 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38120 544 / 0 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008299
[exp]
1122 / 0 AT4G38120 995 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G454200
[exp]
714 / 0 AT4G38120 1032 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF02985 HEAT HEAT repeat
Representative CDS sequence
>Lus10033267 pacid=23172197 polypeptide=Lus10033267 locus=Lus10033267.g ID=Lus10033267.BGIv1.0 annot-version=v1.0
ATGTGTGTCTTGGTAGACAAGGATCAGTCTGGTGTTCTTTCAACAATATTTCAATATTCAGAGCAACTGTCCAGCCTAACAATATGCTTTGAGGCTCTTC
AGACTCTTAGAGCTCTAATGCACAATTATCCCAGTACAGCACCAGAATGTTGGGAGCCTGTGACCAGCTTAGTCTCCAATATCTTGAAGGCCTCCACTGT
GGAAGGATCCTCAACTATTTGCCAAGGTAATGGCGACTACAATGTTGGCTTTGTCGGAGAGAAGGTCATAACAGCAGCCATCAAGGTTACAGACGAATGT
CTCCGTGCAATTTCTGGATTTAAAGGAACAGAGGAACATTCTGATGATAAATTCCCGGAAACCCCTTTTGCATATGACTGTATAAGGGAAAAGAAAGTTT
CTTCTGCACCATTGTATGAAACAGAGAGTGCAGTGGATAACAAAGTTGAATCGGAAGCATGTGAAACTGCATGTGATCATTGGTCCAGGACAATAGACTG
GCTTATGCCTCTGATACTACGGCACAATTCTCATATGGTGAGAACTGCATCAATCACTTGTTTTGCGGGTATTACATCCTCAGTCTTTGGGGCTCTCTCA
AAGGATGACCAGGAGTTTATTGTAAATTCATCTATCAGTGCTGCTGTGCACGACGAAGTGGCTTCAGTTAGGTCAGCTGCTTGTCGAGCGATTGGTGTGA
TTTCTTTTTTTCCACAGATTTCTCATAGTGCAGAAATCCTTGATAGGTTTATCAATGCCATTGTGAAGAATGCTCATGATCCTTTAGCTGCGGTGCGAAT
TGCGGCTTCATGGGCTTTGGCAAATATATGCGATTCTTTGCGCCATTGTGTGGATGATTTTCCCTTGAGACAGTCTACAGATTCAAATGCCAACCCCAAC
GTGGTTGTCTTTCTTATGGAGACTGCACTGCGTCTGACAAAAAGTGGAGATAAGATAAAATCAAATGCTGTGAGGGCTCTTGGAAATCTTTCAAGATTTG
TCCGAAGTATTGATACGTCTGGAGGTGGTGATAAACATGTGAAACATAACAATTTGAGGTTCGAAGGAAAAAGACTAGTTGGGCATGGCCGTGGAAGTTC
TGGTTATGCTTCGTTAGGAGATCCATGTTTGTTGCAGAAAATGGTTCAAGCTTTCCTTTCTTGTGTTACTACTGGGAATGTTAAGGTCCAATGGAATGTC
TGCCATGCTATCAGCAATCTATTTATAAATGAGACTTTGAGGCTGCAAGATATGGATTGGGCTCCATCAGTTTTCAGCATCCTTCTGCTCCTGTTGCGTG
ATTCTTCTAATTTTAAGATCAGAATACAAGCAGCTGCTGCTCTGGCTGTGCCGGTCTCGGCAATAGATTATGGAGAATCTTTCCCTGATGTACTCCAAGG
TTTGGAACATGTGATGGAGAATCTAAGTTCGGACCAGATTTCAGCACCATCAAGTTTTAAGTATAGGGTTGCACTGGAGAAACAGGTAACATCTACCATG
TTGCATGTCCTTAGCCTTACGGCCAGCATTGATCACCAATCCGTGAAAGACTTTCTTGTCAAAAAAGCATTGTATCTAGAGGAGTGGTTTAAACTTCTAT
GCTCGTCCATAGTTGAGACAAGTCCTCAATTTGAAGATGCAGATGCCATTGTAAACCGAAAGAAACAGATGATATTCAAGGCAATCCAATCTCTGATTCA
AGTCTATGGGAACAGTAATCATCATTCAATTGCAGGGAAGTTCAAGAATTTGGAAAGAAGATAG
AA sequence
>Lus10033267 pacid=23172197 polypeptide=Lus10033267 locus=Lus10033267.g ID=Lus10033267.BGIv1.0 annot-version=v1.0
MCVLVDKDQSGVLSTIFQYSEQLSSLTICFEALQTLRALMHNYPSTAPECWEPVTSLVSNILKASTVEGSSTICQGNGDYNVGFVGEKVITAAIKVTDEC
LRAISGFKGTEEHSDDKFPETPFAYDCIREKKVSSAPLYETESAVDNKVESEACETACDHWSRTIDWLMPLILRHNSHMVRTASITCFAGITSSVFGALS
KDDQEFIVNSSISAAVHDEVASVRSAACRAIGVISFFPQISHSAEILDRFINAIVKNAHDPLAAVRIAASWALANICDSLRHCVDDFPLRQSTDSNANPN
VVVFLMETALRLTKSGDKIKSNAVRALGNLSRFVRSIDTSGGGDKHVKHNNLRFEGKRLVGHGRGSSGYASLGDPCLLQKMVQAFLSCVTTGNVKVQWNV
CHAISNLFINETLRLQDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPVSAIDYGESFPDVLQGLEHVMENLSSDQISAPSSFKYRVALEKQVTSTM
LHVLSLTASIDHQSVKDFLVKKALYLEEWFKLLCSSIVETSPQFEDADAIVNRKKQMIFKAIQSLIQVYGNSNHHSIAGKFKNLERR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G38120 ARM repeat superfamily protein... Lus10033267
[exp]
0 1
AT1G55750 BSD domain (BTF2-like transcri... Lus10007089
[exp]
2.8 0.8335
AT1G15240 Phox-associated domain;Phox-li... Lus10035877
[exp]
6.0 0.7966
AT1G68930 pentatricopeptide (PPR) repeat... Lus10037799
[exp]
8.1 0.7973
AT1G55750 BSD domain (BTF2-like transcri... Lus10020465
[exp]
9.8 0.7891
AT1G04900 Protein of unknown function (D... Lus10016677
[exp]
10.2 0.7320
AT1G76630 Tetratricopeptide repeat (TPR)... Lus10025170
[exp]
13.0 0.7852
AT1G74600 OTP87 organelle transcript processin... Lus10024220
[exp]
15.7 0.7244
AT5G56730 Insulinase (Peptidase family M... Lus10012918
[exp]
17.0 0.7874
AT1G71210 Pentatricopeptide repeat (PPR)... Lus10008998
[exp]
17.2 0.7806
AT3G13690 Protein kinase protein with ad... Lus10006148
[exp]
19.1 0.7240

Lus10033267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.