Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10380 399 / 1e-140 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT1G80760 308 / 1e-104 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT5G37820 176 / 2e-53 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 168 / 3e-50 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT5G37810 166 / 1e-49 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 167 / 2e-49 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT4G19030 165 / 4e-49 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT2G34390 147 / 2e-42 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 127 / 9e-35 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT3G16240 92 / 1e-21 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010153 [exp] 423 / 3e-150 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 413 / 2e-146 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10024066 [exp] 293 / 5e-99 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10041674 [exp] 223 / 6e-73 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10041675 [exp] 181 / 1e-56 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1) Lus10029274 [exp] 173 / 2e-52 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 160 / 1e-47 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10041222 [exp] 145 / 2e-41 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Lus10020929 [exp] 144 / 8e-41 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146900 [exp] 397 / 5e-140 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.001G455000 [exp] 396 / 8e-140 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.001G046800 [exp] 305 / 7e-104 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 305 / 7e-104 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G072100 [exp] 175 / 5e-53 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 171 / 1e-51 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 164 / 3e-49 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 159 / 6e-47 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 157 / 2e-46 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.008G203300 [exp] 144 / 5e-41 AT3G06100 261 / 1e-86 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10033268 pacid=23172086 polypeptide=Lus10033268 locus=Lus10033268.g ID=Lus10033268.BGIv1.0 annot-version=v1.0 ATGCCGGAGCCGGAAGGAGGAGGGACGCCAGCGACGCCGGGGACGCCAGGGGGTCCTCTGTTTTCGGGTGAGAGGGTTGACTCGCTGTCGTACGATCGGG GATCGATGGAGAAGAGATGCAAGTGTTTCCCGGTGACAATTACCGGTGGATGGAGTAACGGTGGTGGTCAACCGAACGTCGACGCGCCAAGCTGCTTCAC TGATTTCCCAACTCCCGATGTTTCTCTGGCTCGCAAGCTAGGAGCAGAATTCGTGGGGACATTCATACTGATATTCGCAGCGACGGCGGGGCCCATAGTG AACCAGAAGTACAACGGAGCCGAGACGCTGATCGGAAACGCGGCGTGTTCCGGGTTAGCGGTGATGATCATAATACTATCCACGGGCCACATCTCGGGGG CCCATTTGAACCCGGCCCTCACCTTAGCCTTCGCCTTCCTCCGCCACTTCCCCTGGGCCCACGTCCCTGCCTACATCGCCACGCAGGTGTCCGCCTCCAT CTGCGCCGCATTTGCCCTGAAGGGAGTGTTCCATCCGTTCATGTCCGGCGGCGTCACCGTTCCTTCTGTCGGACATGGGCAGGCGTTCGCGTTGGAGTTC TTCATCACTTTCATTCTGCTGTTTGTTGTCACCGCCGTTGCTACCGATACTCGTGCGGTTGGAGAGTTGGCGGGAATAGCAGTTGGTGCCACCGTTATGC TCAACATTCTGGTTGCTGGGCCATCAAGCGGGGCATCGATGAATCCGGTGAGGACAATAGGACCAGCAGTGGCAGCAGGGAATTACAGAGCAATATGGAT ATACCTAATTGCCCCCACACTCGGCGGTCTAGCCGGAGCTGGCACCTACACCGCCGTCAAGCTCCGTGACACCGAAGCTGACCCGCCTCGTCCCGTTAGG AGCTTCCGTCGCTAA
AA sequence Show only first row Show all	>Lus10033268 pacid=23172086 polypeptide=Lus10033268 locus=Lus10033268.g ID=Lus10033268.BGIv1.0 annot-version=v1.0 MPEPEGGGTPATPGTPGGPLFSGERVDSLSYDRGSMEKRCKCFPVTITGGWSNGGGQPNVDAPSCFTDFPTPDVSLARKLGAEFVGTFILIFAATAGPIV NQKYNGAETLIGNAACSGLAVMIIILSTGHISGAHLNPALTLAFAFLRHFPWAHVPAYIATQVSASICAAFALKGVFHPFMSGGVTVPSVGHGQAFALEF FITFILLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGASMNPVRTIGPAVAAGNYRAIWIYLIAPTLGGLAGAGTYTAVKLRDTEADPPRPVR SFRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10033268 [exp]	0	1
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	2.4	0.8699
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	15.9	0.8587
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	16.4	0.8675
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	17.2	0.8786
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	29.2	0.8602
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	30.3	0.8622
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	33.7	0.8257
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	42.0	0.8381
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10014165 [exp]	45.7	0.8589
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	46.9	0.8581

Compare expression of checked genes

Lus10033268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.