Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008301 [exp] 825 / 0 ND / Lus10034741 [exp] 152 / 8e-44 ND / Lus10022964 [exp] 105 / 9e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103100 [exp] 440 / 4e-150 ND / Potri.001G130800 [exp] 408 / 4e-138 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033269 pacid=23172162 polypeptide=Lus10033269 locus=Lus10033269.g ID=Lus10033269.BGIv1.0 annot-version=v1.0 ATGGATACTGAAGGAAGAGGGTTCTCTTCAGATTTGTGTAGGAATACAAGTGAGGAGATGTTCATCAAGTCCTTGATGGAGACTTCTTCTGGAGTTGCAG CACCTACCATGGAGATGCTAGGGTTTAAGAATCTCTCCCAGAATTTCCGAACCGATAGTGAGGAGCTCTTCAAGAGCTGGCTTACTACTGGAGAGGCAAG CAGTATTACAAGCTTTAATGGAGCTGATCCATCATCCTATCTGCAGAATAATCATGGATATGGCACACCAAGCATCGCACATCGGACGCGACAAGCATCA AAGAGTAAGGGGACTGTTGACAGGAACATGCAAGCTAGTAATTTATACTTGGCCAAGGCCTGGTTTCAGAGTTCTCAACCTATGACACGGAGCAGATCAT CTGAGCTACGGAAGAGATATGTGGCCATGCAAACTTCTGGAGAGAACGGTTCTGCAAATGATGAAGGTGGAATGAGACACGAGTTCTCAAATCAAAGCCG TCTCGGTGACCCCTCTTTGCACGATGTAGCGAATCAAATCGGAACATTCATGTCGCCATCCAACTCATCCTCGTCGAATTTCAACACACCTCAGTCTGGA AATTTGGACAACGTATCTTCAGTGGTGAATATGTTGAAGGGCACCCTCGAACGCAAGAAGCTCGGGAACCCCACTACCATTGGAGGAACTATGGAAGGCG GTTCCAATGCAATTTATAATCAGCAGCATGGATATGCGCAAGAAGTAGTTACGATGAACCCTAGATTCGAGGAAGGGAACCGGGGCCTAGATAGTTTACA AGAGTTGGCATCAGCAATAGCCAAGAACCCTGTGAACAACACTAGCTTTCTGGAGACGGTTCAAGAAGTGATGAATTTCGAGATGGGAGGCTTTAATGCA AATCCGGCCAATTCGATCCAGATGAACACGGTTTCTCGTGAGCCTTCTCCAAGCGAATCTTCAGCTGCTGCGCCGGTTGTTTCGTCTAGGTTCGACATGT ATGATGGTGCCAGCAACTCCAGTCAAAATGTTAATTGTGGGAGCTCAAAGAAAGCTGCTGCAAATGGTTCAGAACAAGGTGGAAAAGCCAGAGAAATCAG AGAAAGGATAATTGACAATCTGAAGGATGACAGAAAGAAGCTAGTCCGATATGGGTCAATAACATCAGCTACTTCAGTGGAAACTGGAGACCCGACGAAG AAGCGAAGGGTGGAACGCTCCCGGAAGATGGCGGAAGCGAAGGAGAGGAGTTCGACACCTGCAGTTCCGTCGGATATGCAGTCAGTGACCAAAAGGTGTG AGCTTTTGGAGAAGGAAGTTAGATCGCTCAAACTCAACTTGTCTTTCATGAACCGAAAGGATTCTGAACAGACTAAGCAGATTGAGGATCTCCAGAAACA GAACGAGGAGTTGACAGAAGAGAAAGAACGTCTGCTGGAGGAGATGGAGAGGATCCTTTCTGAAACCGGCAAGTTCTGA
AA sequence Show only first row Show all	>Lus10033269 pacid=23172162 polypeptide=Lus10033269 locus=Lus10033269.g ID=Lus10033269.BGIv1.0 annot-version=v1.0 MDTEGRGFSSDLCRNTSEEMFIKSLMETSSGVAAPTMEMLGFKNLSQNFRTDSEELFKSWLTTGEASSITSFNGADPSSYLQNNHGYGTPSIAHRTRQAS KSKGTVDRNMQASNLYLAKAWFQSSQPMTRSRSSELRKRYVAMQTSGENGSANDEGGMRHEFSNQSRLGDPSLHDVANQIGTFMSPSNSSSSNFNTPQSG NLDNVSSVVNMLKGTLERKKLGNPTTIGGTMEGGSNAIYNQQHGYAQEVVTMNPRFEEGNRGLDSLQELASAIAKNPVNNTSFLETVQEVMNFEMGGFNA NPANSIQMNTVSREPSPSESSAAAPVVSSRFDMYDGASNSSQNVNCGSSKKAAANGSEQGGKAREIRERIIDNLKDDRKKLVRYGSITSATSVETGDPTK KRRVERSRKMAEAKERSSTPAVPSDMQSVTKRCELLEKEVRSLKLNLSFMNRKDSEQTKQIEDLQKQNEELTEEKERLLEEMERILSETGKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033269 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	1.0	0.9746
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	2.0	0.9716
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	2.2	0.9658
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	2.4	0.9686
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	2.4	0.9621
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	2.8	0.9661
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10010761 [exp]	3.5	0.9515
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	4.0	0.9562
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	4.2	0.9530
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	4.8	0.9462

Compare expression of checked genes

Lus10033269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.