Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) AT1G31470 159 / 5e-47 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT4G19450 155 / 1e-45 Major facilitator superfamily protein (.1) AT3G01630 147 / 9e-43 Major facilitator superfamily protein (.1) AT2G30300 82 / 4e-19 Major facilitator superfamily protein (.1) AT2G16660 66 / 1e-13 Major facilitator superfamily protein (.1) AT4G34950 66 / 2e-13 Major facilitator superfamily protein (.1) AT3G01930 57 / 2e-10 Major facilitator superfamily protein (.1.2) AT5G14120 57 / 2e-10 Major facilitator superfamily protein (.1) AT1G74780 57 / 4e-10 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034738 [exp] 200 / 1e-62 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033280 [exp] 119 / 4e-35 AT5G45275 72 / 3e-15 Major facilitator superfamily protein (.1) Lus10042234 [exp] 97 / 1e-26 AT2G30300 116 / 3e-31 Major facilitator superfamily protein (.1) Lus10015470 [exp] 102 / 4e-26 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10026422 [exp] 96 / 5e-24 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015469 [exp] 96 / 6e-24 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10019941 [exp] 92 / 1e-22 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1) Lus10025053 [exp] 71 / 3e-15 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 70 / 1e-14 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128200 [exp] 194 / 4e-60 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 190 / 1e-58 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 89 / 1e-21 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 89 / 2e-21 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 85 / 5e-20 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 71 / 4e-15 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 71 / 5e-15 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 64 / 1e-12 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 63 / 3e-12 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 61 / 7e-12 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033270 pacid=23172112 polypeptide=Lus10033270 locus=Lus10033270.g ID=Lus10033270.BGIv1.0 annot-version=v1.0 ATGGCACTGTACATAGCAAGTGGCATGGTCGGACTCAGCTCGGGGTTCATTTTTGCAGCAGCAGTGTCTATAACCTCGGAGCTGTTCGGTCCCAACAGTG TGAGTGTGAACCATAACATTCTCATCACCAACATCCCGGTAGGATCGCTCATTTACGGGTTCCTGGCGGCCATAGTGTACGATGCTAATGCAATGTCCGG GTCCGGTAAGGGAGGCATTATGAACGTGTTGAACTCGGACTCGATAGTATGCATGGGGAAGGAGTGTTATTTCTTGACGTTTGTGTGGTGGGGGTGTCTG GCTATTGTCGGGTTGGTTTCTAGTATGCTGCTCTTCTTGAGGACGAGACATGCTTATGATCAGTTTGAACGGAAACGTGCTGTATCATCACAGCTTTATT AG
AA sequence Show only first row Show all	>Lus10033270 pacid=23172112 polypeptide=Lus10033270 locus=Lus10033270.g ID=Lus10033270.BGIv1.0 annot-version=v1.0 MALYIASGMVGLSSGFIFAAAVSITSELFGPNSVSVNHNILITNIPVGSLIYGFLAAIVYDANAMSGSGKGGIMNVLNSDSIVCMGKECYFLTFVWWGCL AIVGLVSSMLLFLRTRHAYDQFERKRAVSSQLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	0	1
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10017779 [exp]	6.4	0.7810
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	7.7	0.7521
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	15.7	0.7620
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10007071 [exp]	22.4	0.7241
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	24.0	0.7091
AT1G33810			unknown protein		Lus10005296 [exp]	37.8	0.6092
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	50.5	0.7181
AT2G41150			unknown protein		Lus10008860 [exp]	79.5	0.7024
AT4G14450		ATBET12	unknown protein		Lus10022200 [exp]	90.2	0.6821
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	94.1	0.6776

Compare expression of checked genes

Lus10033270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.