Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19450 483 / 3e-168 Major facilitator superfamily protein (.1) AT5G45275 462 / 4e-160 Major facilitator superfamily protein (.1) AT1G31470 327 / 4e-107 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 300 / 5e-97 Major facilitator superfamily protein (.1) AT4G34950 160 / 4e-44 Major facilitator superfamily protein (.1) AT2G30300 142 / 2e-37 Major facilitator superfamily protein (.1) AT2G16660 131 / 1e-33 Major facilitator superfamily protein (.1) AT1G80530 112 / 7e-27 Major facilitator superfamily protein (.1) AT5G50630 101 / 3e-23 Major facilitator superfamily protein (.1) AT5G50520 101 / 3e-23 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034738 [exp] 726 / 0 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10026422 [exp] 213 / 3e-63 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015469 [exp] 168 / 6e-47 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10015470 [exp] 136 / 4e-35 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10025053 [exp] 135 / 7e-35 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 134 / 1e-34 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 122 / 3e-30 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 114 / 1e-27 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10019941 [exp] 110 / 3e-26 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128200 [exp] 535 / 0 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 527 / 0 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 178 / 9e-51 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 175 / 8e-50 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 162 / 1e-44 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 155 / 4e-42 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 154 / 1e-41 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 121 / 6e-30 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 119 / 2e-29 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 119 / 3e-29 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10033271 pacid=23172176 polypeptide=Lus10033271 locus=Lus10033271.g ID=Lus10033271.BGIv1.0 annot-version=v1.0 ATGGCCGGACAGTCGAGGAAATGGATGATACTTGTGGCGACGATATGGATTCAGGCCTTCACCGGAACCAATTTCGATTTCTCCGCCTACTCCTCGCAAT TGAAATCGGTTCTAGGGATCTCCCAGGTCCAATTGAATTACCTGGCCGTGGCGTCCGATTTGGGCAAGGTTTTCGGCTGGTCGTCTGGACTGGCGCTGAT GTACTTCCCGCTATGGACGGTTCTGTTCTCCGCCGCGTTCATGGGGCTTTTTGGCTACGGCCTTCAGTGGTTGGTGATTCGGGAATTCATATCTCTGCCT TACATTCTGGTGTTCATGCTCTGTCTAATAGCTGGGTGCAGCATATGCTGGTTCAACACTGTATGTTTTGTTCTCTGCATTCAAAACTTCCCAGTCAGTC GATCCTTGGCACTTTCCCTCACTGTAAGTTTCTTTTTTTCCTCTGTAAGCTTCAACGGGGTAAGTGCAGCCATTTACACCCTTGCTGCTAATGCTATAGA TTCATCATCGGATGAGCTGTACCTTCTCTTAAATGCTCTTGCTCCCTTTATTGTCTCCGTTGTAGCTTTAGTCCCCATTCTCCGCCAACCAACTTTAGAT CCTCTGTCCCCTGACGGTGTCCGCCGGGATTCAGTTGTATTTATCATCTTGAACTTGTTAGCCATACTCAACGGCATGTACCTCCTCTTGTTCGGTACAA ATACAACCGATCAAATGATTGCTCATATGCGATTTGCTGGAGCAGTTTTCCTCCTCATTCTGCCACTGTGCATCCCTGGGATTGTCTATGCCAGGCAATG GTTTCACGAGGCCATCGTCAATACCAGTTTCCAAATTCCTGAAGGGTCTACCTTTATGCTTGTTGATGTTGATGATCTCGAGCTTCACAAGGAGCTTCTC ATCCGCGAGTCGAGCACCAATGGAGGAGACAAAGAATTTTTGGAATGGGATGTTTCACCACTTCTCGGGGAAAGTATCAACGACAGCGATTCGAAAGGGA GCTGCTGTGAAGCTGTGGTTGGGAAAGATAAATTGACAATGCTGGGAGAAGAGCACTCAGCTTTAAAACTTGTGAGGAGGTTGGATTTCTGGCTATACTT CCTTGCTTACTTCTGCGGAGGCACAATCGGACTCGTTTACAGCAATAACCTCGGACAAATTGCACTCAGGTGA
AA sequence Show only first row Show all	>Lus10033271 pacid=23172176 polypeptide=Lus10033271 locus=Lus10033271.g ID=Lus10033271.BGIv1.0 annot-version=v1.0 MAGQSRKWMILVATIWIQAFTGTNFDFSAYSSQLKSVLGISQVQLNYLAVASDLGKVFGWSSGLALMYFPLWTVLFSAAFMGLFGYGLQWLVIREFISLP YILVFMLCLIAGCSICWFNTVCFVLCIQNFPVSRSLALSLTVSFFFSSVSFNGVSAAIYTLAANAIDSSSDELYLLLNALAPFIVSVVALVPILRQPTLD PLSPDGVRRDSVVFIILNLLAILNGMYLLLFGTNTTDQMIAHMRFAGAVFLLILPLCIPGIVYARQWFHEAIVNTSFQIPEGSTFMLVDVDDLELHKELL IRESSTNGGDKEFLEWDVSPLLGESINDSDSKGSCCEAVVGKDKLTMLGEEHSALKLVRRLDFWLYFLAYFCGGTIGLVYSNNLGQIALR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19450			Major facilitator superfamily ...		Lus10033271 [exp]	0	1
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	3.2	0.8229
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	3.9	0.8217
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	6.2	0.8287
AT2G41150			unknown protein		Lus10008860 [exp]	14.3	0.7835
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	16.3	0.7781
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	17.4	0.7898
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	19.7	0.7744
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	28.8	0.7632
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10003418 [exp]	30.2	0.7382
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	31.6	0.7157

Compare expression of checked genes

Lus10033271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.