Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19130 363 / 2e-114 Replication factor-A protein 1-related (.1) AT5G45400 358 / 1e-111 ATRPA70C Replication factor-A protein 1-related (.1) AT2G06510 291 / 6e-89 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G08020 129 / 4e-31 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 122 / 9e-29 ATRPA70D Replication factor-A protein 1-related (.1) AT1G52950 54 / 2e-07 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034737 [exp] 682 / 0 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10023805 [exp] 397 / 4e-126 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 383 / 3e-121 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10034736 [exp] 361 / 1e-120 AT5G45400 90 / 3e-20 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 285 / 1e-90 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033436 [exp] 125 / 3e-30 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10040517 [exp] 125 / 1e-29 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 124 / 3e-29 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 119 / 2e-27 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102700 [exp] 423 / 2e-136 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 308 / 1e-94 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.015G057300 [exp] 114 / 4e-26 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033272 pacid=23172080 polypeptide=Lus10033272 locus=Lus10033272.g ID=Lus10033272.BGIv1.0 annot-version=v1.0 ATGGTGGATCTGACTGAAGGCGCCATAGCCCGTATTACCGGAGGCGCCACTTCGCCTGATCTCCGGCCGATACTTCAGGTGACGGAGCTGAAGCAGCTCC AGACGAAACGAAAGCAGGATGTGGACCAGTTCCGATTGGTGCTATCCGACGGTTGCCACTTGCAGCAGGCTACGCTCGGAACTCAGCTTAACCACTTGGT CAGAGATGGAAACTTGCGACCTGGTTCCGTTGTTCAGTTAATTCATTACACTCGCATCACCATCCAAAACCGAGTGATTATTGTTGTAGTTGATATGGCC GTGGTGGTTGAAGAATGTGGCTTTTTGATTGGTTTTCCTCTGTCATTGCAAAAGACTTCAGGACCATCCCCGGCTGCACCTACAGATCATCCAATGAATG CTTACTCATATCCTCAGCTGTCTGATGGTGGTGGTATAATTGACTGTCAGGTAGCAGAAAATCGGAATCTGGTTGCAGCATCTGGGCAACACCCTCAAGT TAAGCAACCGAACAATGATTCTCATTCTATGAGTTATGATGCCGGGAGGACTATTGGTGCTACTTTTGTAGAATCATCACCATCAAGTATGCCGTACCTT GATCAGGCTAGGGCTGAGTTTTTCCGTCACAGCTATGGTGGATCTCACATCGCGCGTATTATTGGAGGCGCTGCTTCCCGTGATCTCCAGCCTATAGTGC AGGTGACAGAGCTGAATCGGGCGCCAATGATATCAGTGCAGCATCATGTCGACCGGTTCAAGTTGGTGCTATCTGACGGTTGCTACTTGCAGACGGCAAT GCTCGGAACTCAGATTAACTACTTGGTGACAGATGGAAACTTGCGAGCTGGTTCCCTTGTTCAGTTGACTAAAGACACTTGCACAACTGTCCAAACTCGA AATATGATTGTTATTGTAATTGAATTGCTGGTGGTGGAAAAGGAACGTCGTCTGATTGGGTATCCAGTGTCGTTGGATTCAGGGCAATCCCATCCATCTA CATATCATCCAATGAGCTATGTTGCTGGAATAAATGCTGGTGCTACTTCATCAGATATGCCAAGGGTTCCTTCAGGCACTCATTGTAATATGTCTCAAGT GGCATATCCGGAACCACCTGCTGCTGTACCATTTGTATGGAATGAGGTTCCTGGAGGAATGATCATTCCAATTGGTGCTTTAAATCTATACCAGGCTAGA TGGGCAATCAAAGCCAGGAAGAACTGTGGTCACCGTAACGATATAGAGATCTTCTTGGAGAATGGCTCCATTGTACAGTACTGTTACGAAGACGACAACT CGATTCCAAGCCAGAAGAGAAACCTACAATTGAAAGACATGTCTGGCCGTAGTGTTGAATTGACCCTATGTGGAAAGTTCTGCAGCGCAGAAGGTCAAGT ACTGCAGAATATTTGTGACTTGGGGAAATTCGCTGTTCTTGCAGTTAAATCTGCCTGGATTAGTTTCTTCAATGGCAAGACATTGGGGACCATTTCTACA AGTCAGCTATTTATCGATCCAGATTTCCCAGAGGCTCGTATCCTCAAACAGTGGTTTGACAAGGAAGGGAGGAACACCCCCTCTGTCTCTATTTCCAGGA ATTTGTCAACTGAGGGAAGAACTGATGCTCTAAATACTCTTTCTCAGATCAAAGAAGGTAAGCTTGGGAGGTCCATGGGTCCAAATTGGATTACTGTTTC CTACACATCTTGCTCTATAATGATTGGGCAGCGAAAGTGTAACCAGAAGGTTACAAAGAATGGAGATGGGAAGTGGCGCTGTGAGAGGTGCGATCAATGT GTCGATGAATGTGATTACAGGTACATGCTCCAGCTTCAAATACAAGACCATACCGACATCACATGGGTGACCCTTTTTCAGGAATGTGCTGAACAGCTTA TGGGAATATCTGCTAAAGATCTTCATTCTATGAGGTTCGGCCAACATGATGACAAGGGATTCATGAACGTCTTTCGTCGAGTTCTGTTCACAAGATATGC ATTCAAGCTGAAAATAGAAGAGGGAACATTCGGGGTCGAACAACGAGGGAAGTGTACTGTTGTCAAGGCAGAGAAGATGAACTATGCTTCCCACCCTAGA GCTCTTTTGGATTTGATGGAGAAGTTCAAGGCTGGGATCCTTACATCTCATTACCCACGGTGGACATGGGCCACACAGATGCCTCTTTGA
AA sequence Show only first row Show all	>Lus10033272 pacid=23172080 polypeptide=Lus10033272 locus=Lus10033272.g ID=Lus10033272.BGIv1.0 annot-version=v1.0 MVDLTEGAIARITGGATSPDLRPILQVTELKQLQTKRKQDVDQFRLVLSDGCHLQQATLGTQLNHLVRDGNLRPGSVVQLIHYTRITIQNRVIIVVVDMA VVVEECGFLIGFPLSLQKTSGPSPAAPTDHPMNAYSYPQLSDGGGIIDCQVAENRNLVAASGQHPQVKQPNNDSHSMSYDAGRTIGATFVESSPSSMPYL DQARAEFFRHSYGGSHIARIIGGAASRDLQPIVQVTELNRAPMISVQHHVDRFKLVLSDGCYLQTAMLGTQINYLVTDGNLRAGSLVQLTKDTCTTVQTR NMIVIVIELLVVEKERRLIGYPVSLDSGQSHPSTYHPMSYVAGINAGATSSDMPRVPSGTHCNMSQVAYPEPPAAVPFVWNEVPGGMIIPIGALNLYQAR WAIKARKNCGHRNDIEIFLENGSIVQYCYEDDNSIPSQKRNLQLKDMSGRSVELTLCGKFCSAEGQVLQNICDLGKFAVLAVKSAWISFFNGKTLGTIST SQLFIDPDFPEARILKQWFDKEGRNTPSVSISRNLSTEGRTDALNTLSQIKEGKLGRSMGPNWITVSYTSCSIMIGQRKCNQKVTKNGDGKWRCERCDQC VDECDYRYMLQLQIQDHTDITWVTLFQECAEQLMGISAKDLHSMRFGQHDDKGFMNVFRRVLFTRYAFKLKIEEGTFGVEQRGKCTVVKAEKMNYASHPR ALLDLMEKFKAGILTSHYPRWTWATQMPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Lus10033272 [exp]	0	1
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	15.6	0.8576
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	19.0	0.8439
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	21.0	0.8479
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	26.4	0.8353
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	32.4	0.8391
AT5G44150			unknown protein		Lus10018632 [exp]	35.9	0.7995
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	36.4	0.8352
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	36.7	0.8046
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	37.6	0.8344
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10002949 [exp]	48.6	0.7439

Compare expression of checked genes

Lus10033272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.