Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29760 228 / 4e-69 Putative adipose-regulatory protein (Seipin) (.1) AT2G34380 218 / 9e-66 Putative adipose-regulatory protein (Seipin) (.1) AT5G16460 145 / 1e-39 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034735 [exp] 782 / 0 AT1G29760 231 / 3e-70 Putative adipose-regulatory protein (Seipin) (.1) Lus10007323 [exp] 224 / 1e-69 AT1G29760 355 / 1e-119 Putative adipose-regulatory protein (Seipin) (.1) Lus10020213 [exp] 133 / 2e-34 AT5G16460 285 / 4e-93 Putative adipose-regulatory protein (Seipin) (.1) Lus10026836 [exp] 131 / 8e-34 AT5G16460 282 / 3e-92 Putative adipose-regulatory protein (Seipin) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072200 [exp] 234 / 2e-71 AT1G29760 382 / 4e-127 Putative adipose-regulatory protein (Seipin) (.1) Potri.013G085850 [exp] 137 / 2e-36 AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1) Potri.003G025975 [exp] 68 / 5e-14 AT1G29760 60 / 5e-12 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06775 [flax] [poplar] Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence Show only first row Show all	>Lus10033273 pacid=23172203 polypeptide=Lus10033273 locus=Lus10033273.g ID=Lus10033273.BGIv1.0 annot-version=v1.0 ATGGATGAACCACCAAACACACAAGCAAATCATGTGTTTCCTCGGCAACCCAATACTCTATACGACTCAATCAAATGCATCCTTTTCAAAGCCGCCATCA ATGGCGCTGAAAGGCTGATGCTTGAAGGAAAGAAGAAGCACACCAATGTCTGCAACTTTATCCACACTTTAGAAAACAGAGGATCCTCTGCCTCCCCTGT TTTTTCAGGTGAAATGATTATGATCAATCCCCATCACAAATCCGAACCCTTTCTCCCCATTTCCAGCATCCTTAAGCTTCCACATCTCCTGATGATGAAG TTCTTCGCTTTCCAAATGCATTTCCTGATATCTTTCTTTACATTCCCTATCCGGGTTACGAGCTTATCGTTCATCACGCTGAAGCAGGCGGTACAGGGGC ACTTGGTGGTCAAGAACATTGTTCTCAAGCTCCGTGGAGCTGTCGTCAGGAAAGCAATTGGAATTGGAAGTGGAGAAGCCAAGAAATCTGCGATGACGAC AAGAGACGTGGCTGTGAAGTTGGCGCGTGGAGTTGTGTGGTCTTGTTATGTGGGTTTGGTGCTTGCCGGGATGCTGGCTTGTGGGTTCTTGTTTGGGAGT TTGCTTGTGAGCAGTGTGGTGGAGCCGCCATTTCAGGGGAAGGAAGCTTTGAACTTTGACTATACTAAGGATTCTCCGGTTGCTTACTTGCCGTTGGTTG TTCCTCACAGTCGGAAGCTGCAGCTTACTGTATCGTTGGTGATGCCGGAGTCAGATTACAATCGGAAGCTTGGCATGTTCCAGGTGAGGGTGGAGCTACT GTCATCAATGGGGAAAGTGATGGAGACCACAAGCAGTCCATGCATACTGCAGTTCAAAAGCCAACCCATCCGCCTGGCCGTGACCCTGATCAAGAGTTTG CCACTCTTGATCGGTGCAATGTCAGAATCCCAAACAGTCGAGCTGAGGATGGACGCACTCTCAGCAGGTGGCATCGACGACCCAACTGCTTCAATCAAAG TGTCCCTGGACCAACGAGCCGAGTATAAAGTACCCGGTGCTGGAATCCCTGAAGTTTATGCAGCATGGCTGAAGCTCGAATCTCAACTCCCTCCAGCAAA GAGGTTGTTGTGGCAATGGAGGAGAACTGTCTACATCTGGACTGGAATTCTCCTGTTTTTGATACAGTTGGTGGTGGCATTCGTCTTCTGTAGACCTTTG ATTATTCCAGCAGCTGGATTTGGAACAAAGTCGTCGTCTCAGATTGTGAAGGTGTTTGCTGCGAAGTACATTGAATGA
AA sequence Show only first row Show all	>Lus10033273 pacid=23172203 polypeptide=Lus10033273 locus=Lus10033273.g ID=Lus10033273.BGIv1.0 annot-version=v1.0 MDEPPNTQANHVFPRQPNTLYDSIKCILFKAAINGAERLMLEGKKKHTNVCNFIHTLENRGSSASPVFSGEMIMINPHHKSEPFLPISSILKLPHLLMMK FFAFQMHFLISFFTFPIRVTSLSFITLKQAVQGHLVVKNIVLKLRGAVVRKAIGIGSGEAKKSAMTTRDVAVKLARGVVWSCYVGLVLAGMLACGFLFGS LLVSSVVEPPFQGKEALNFDYTKDSPVAYLPLVVPHSRKLQLTVSLVMPESDYNRKLGMFQVRVELLSSMGKVMETTSSPCILQFKSQPIRLAVTLIKSL PLLIGAMSESQTVELRMDALSAGGIDDPTASIKVSLDQRAEYKVPGAGIPEVYAAWLKLESQLPPAKRLLWQWRRTVYIWTGILLFLIQLVVAFVFCRPL IIPAAGFGTKSSSQIVKVFAAKYIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29760			Putative adipose-regulatory pr...		Lus10033273 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	3.6	0.9356
AT3G19660			unknown protein		Lus10012438 [exp]	4.7	0.9291
AT4G22750			DHHC-type zinc finger family p...		Lus10015872 [exp]	9.8	0.8960
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	10.5	0.9198
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	15.2	0.9243
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	15.5	0.9224
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	16.6	0.9279
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	17.4	0.9286
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10008392 [exp]	17.7	0.9266
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	19.0	0.9130

Compare expression of checked genes

Lus10033273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.