Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09140 1030 / 0 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G02460 131 / 3e-31 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G35520 91 / 2e-18 MLH3, ATMLH3 MUTL protein homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034734 [exp] 712 / 0 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10030376 [exp] 142 / 1e-34 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10007866 [exp] 136 / 6e-33 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10016691 [exp] 82 / 1e-15 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 79 / 1e-14 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078700 [exp] 1097 / 0 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Potri.014G130800 [exp] 143 / 5e-35 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.005G101900 [exp] 96 / 5e-20 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01119 [flax] [poplar] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10033274 pacid=23172131 polypeptide=Lus10033274 locus=Lus10033274.g ID=Lus10033274.BGIv1.0 annot-version=v1.0 ATGGACATGGAATTCGAACTGGAGAGGCCGCCCTCGCCAAATCCAATGGAACCTCCAAAGATTCGCCGCCTCGACGAGTCTGTCGTGAACCGAATTGCGG CAGGCGAGGTGATTCAACGGCCAGTCTCCGCTGTCAAAGAGCTAGTGGAGAACAGCTTAGACGCCCACTCCACCTCCATCAACGTCGTCATCAAGGACGG AGGCCTCAAGCTCATTCAAGTCTCCGATGATGGCCACGGAATTCGGTACGAAGATTTGCCGATACTCTGCGAGCGACACACGACGTCGAAGCTATCTACT TACGAGGACTTGCAGACGGTACAGTCGATGGGGTTTAGAGGAGAGGCGCTGGCTAGCATGACTCACGTGGCTCATGTCACGGTCACAACCATCACAGAAG GCCAGTTGCATGGTTACAGGGTATCATATAAAGATGGCGTTATGGAGCAGCAACCGAAGGCTTGTGCTGCTGTCAAAGGAACTCAGATAATGGTCGAGAA TTTATTCTACAACATGACTGCTCGGAAGAAGACACTTCAGAATACAGCCGATGATTACTTGAAAATTGTAGACGTGCTTAGCCGATTTGCCATCCATCAC ACAAGTGTGAGCTTTTCGTGCAGAAAGCATGGAGCTGGAAGAGCAGATGTCCACTCCTCAGCAACCTCATCGAGGCTTGATTCAATAAGATCTGTTTACG GGGCATCAGTATTCTGCAATCTGATGAAGATAGAAAGCTCTGACAATGATCCTGCAGGATCAATCTTTTCCATGGATGGATTTATCTCAACCTCAAATTA CATAGCAAAGAAAACAACAATGGTGCTTTTTATAAATGACAGATTAGTGGAATGCACTGCTTTGAAGAGAGCTCTTGAAATTGTTTATGCTGCTACCTTA CCCAAAGCATCCAAACCTTTTGTTTACATGTCTATCAAACTTCCACCTGAGCATGTCGATGTGAATGTCCATCCAACAAAAAGAGAGGTCAGCCTTCTGA ATCAAGAAATAATCATTGAGAGGATACAGTTTCTTGCAGAATCGAAATTGAGGAGTTCAAACACCAGAAGGGTGTTCGCAGAACAGACATGTATAGAAGT TAGCAAGAAGACTGTAGAAGCGTCCCAACTCAGTCCATTCAGTGCAAGCAAGGATTCAGACATAGACTCTCCACTCACTGCATCGAAATCACAAAAGGTA GCAGTCAATAAAATTGTTAGAACTGATGCGCTAGATCCAGCAGGGAGGTTGGATGCTTACTTACAAGCAAAACCTCTCGAAGGTTCTGAAGTGTATCCTA GTTTGGCAGCAGTAAGGTCTGCTGTTAGGCAAAGAAGAAATCCAAGGGAAACTGCAGATCTTACTAGCATACAGGAACTAATTGATGGCATGAAACACAA CTGTGATTTTGGTTTGCTGGACATAGTTAGACAATGCACGTTTGTTGGAATGGCAGATAATGTTCTTGCACTGCTTCAGCATGGTACTCATCTGTATCTT GCAAATGTAGTGAACTTAAGCAAGGAGATGATGTATCAGCAAGTTTTGAGGCGGTTTGCTCATTTTAATGCCATTCAGCTAAGTGATCCTGCCCCAATTA AAGATCTTATCATGTTGGCGCTGCAAGAGGACGATGTTGATGCAGAATCTTATGAAAATGATGACCTGAAACAGAAGATTGCAGAAATGAATATGGAATT GCTGAAGAAGAAAACAGAAATGCTGGACGAGTACTTTGGCATATCCATAAACTCAGAGGGATATTTGTCGGGGCTTCCTGTCATTCTTGACCAATATACA CCTGATATGGATGGAGTTCCAGATTTCTTACTCACTTTGGGCAATGACATTGAGTGGGAGAATGAGAAGAATTGCTTTCAAGGAATTGCTGCTGCCGTTG CCAACTTTTACGCCATGCGTCCACCTCTGTTACCAAATCCATCAGGTGATGGGATAGACTTCTACAAGAAAAAAGCCACAAATGATCCTGAAGGAAGTGC CGTTGGAGAGGACGTTCAAATGGAAGAGAGGGATGCGATTGATAATGACCTACTCTCTGAGGCAGAGAACGCATGGGCACAGCGGGAATGGTCAATCCAG CATGTCCTTTTTCCATCAATGAGACTCTTTCTTGAGCCGCCCTCTTCAATGGCGACGAATGGAACGTTTGTAAAGGTTGCTTCCCTGGAGAGGCTTTACA GGGTTTTCGAAAGATGCTGA
AA sequence Show only first row Show all	>Lus10033274 pacid=23172131 polypeptide=Lus10033274 locus=Lus10033274.g ID=Lus10033274.BGIv1.0 annot-version=v1.0 MDMEFELERPPSPNPMEPPKIRRLDESVVNRIAAGEVIQRPVSAVKELVENSLDAHSTSINVVIKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLST YEDLQTVQSMGFRGEALASMTHVAHVTVTTITEGQLHGYRVSYKDGVMEQQPKACAAVKGTQIMVENLFYNMTARKKTLQNTADDYLKIVDVLSRFAIHH TSVSFSCRKHGAGRADVHSSATSSRLDSIRSVYGASVFCNLMKIESSDNDPAGSIFSMDGFISTSNYIAKKTTMVLFINDRLVECTALKRALEIVYAATL PKASKPFVYMSIKLPPEHVDVNVHPTKREVSLLNQEIIIERIQFLAESKLRSSNTRRVFAEQTCIEVSKKTVEASQLSPFSASKDSDIDSPLTASKSQKV AVNKIVRTDALDPAGRLDAYLQAKPLEGSEVYPSLAAVRSAVRQRRNPRETADLTSIQELIDGMKHNCDFGLLDIVRQCTFVGMADNVLALLQHGTHLYL ANVVNLSKEMMYQQVLRRFAHFNAIQLSDPAPIKDLIMLALQEDDVDAESYENDDLKQKIAEMNMELLKKKTEMLDEYFGISINSEGYLSGLPVILDQYT PDMDGVPDFLLTLGNDIEWENEKNCFQGIAAAVANFYAMRPPLLPNPSGDGIDFYKKKATNDPEGSAVGEDVQMEERDAIDNDLLSEAENAWAQREWSIQ HVLFPSMRLFLEPPSSMATNGTFVKVASLERLYRVFERC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	0	1
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	2.0	0.9096
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	4.0	0.8868
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	5.3	0.8688
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	5.9	0.8632
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	6.7	0.8615
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	6.7	0.8814
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	8.1	0.8662
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	12.6	0.8598
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	12.8	0.8570
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10021362 [exp]	12.8	0.8467

Compare expression of checked genes

Lus10033274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.