Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45900 263 / 1e-83 Ribonuclease P protein subunit P38-related (.1) AT5G53020 75 / 3e-14 Ribonuclease P protein subunit P38-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034732 [exp] 704 / 0 AT3G45900 264 / 3e-84 Ribonuclease P protein subunit P38-related (.1) Lus10018117 [exp] 87 / 9e-18 AT5G53020 410 / 4e-133 Ribonuclease P protein subunit P38-related (.1) Lus10022396 [exp] 87 / 9e-18 AT5G53020 414 / 1e-134 Ribonuclease P protein subunit P38-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G130100 [exp] 452 / 1e-156 AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1) Potri.012G016600 [exp] 77 / 7e-15 AT5G53020 464 / 8e-153 Ribonuclease P protein subunit P38-related (.1) Potri.015G012000 [exp] 75 / 5e-14 AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033275 pacid=23172246 polypeptide=Lus10033275 locus=Lus10033275.g ID=Lus10033275.BGIv1.0 annot-version=v1.0 ATGGCAGACGAAGAACCAGAGCTCGCTGCAACTGCCACCGCAGAAGGAGCGGGAGGTGAGACGACCAACAACAATAGGCTCATCTCCTCCTACCTAGGTC TCAGCTTCTCAGTCTTCCTGGCCTTACTCCCGGCCAACGCCCTCACTCTGCTCCCGGCTCTCCAATCCCGCATCCGAGACCTCTCCCTGCGCTTATTCCA AGCCGAGGAGCAGCTCAAGCAGATGAAGTCCAGGCGGCACGAGGACTCCAAGGCCAACGCCAGAGTCGTCGAGATCTTTGCCGGGAATCGGAACGCGTGG CGCGCGGAGGAGAAGCGGCTCCTGCAGCAGATCGACGCCGCCAGCGAGGAGGCGGCGGTGCTGAGGGCGAGAATTCGAGATTTGGAGAAGGAGAAGGAAG AGTGGGGGGTCAGGGTTCATGATTTGGAGAGGGAGGTTGGGGAAAGAGAGGAGATGCTTGGGTTTATGTCCAGAAGCGCTGCTGCTGGTGGTGGTAATGG TGGTGGCAACGATTATTATGAGGAGCATGAGGGTAGGGTGGAGGAAGGAGGTGAAGATGCGTTTGGTGATAATAATAGGCAGTGGTTTGCTTCTGAGGAT GAGTATTTGAACGGGAATGGAAATGGTAATTTCGTGTACGGCGGCTCCTTTCATCACCAGAACCATCATCAGCATCAGCAACAGCAACAGCAGCAGGAGC TTCGTTATGGAGGCTTGGGTTCTGAATTTGCTGCTTCAGCTTCCAAATTCTGGCCTGAGGGAGCTAACAGTCTATGGCAGCAGGATGGACAGCATGAATC TATTGAATCACACTATCACGCGAAACATTTTATAGCAAGAAGGGAATCTCCTTGGAAAGTAGATGGTGATTCATCCGGGGTTTCCACCAAATTAAAATTG CTTGAACAAGAACTCCTTAATCTGGAAAAGGTTGGAAAGGGTGATCTGCTTAAAGTTCCATCACTTCTCAGGAAGCAGACCAAGAGATATCAAGCTCTGG CCGGAAAGATTGACGATCTCTGCAGAAGAATGCAAGCAAGTGATCCGTGTGAACCCGCACTGAGTCCGGAGTTTCGAACGCAAAGGCAAACCGAGTTCTT GCTGGAAGCATTCCGGCTTCAGCAGCGTGCATCCGAGACGGAACAGAAGCTGATGGCTCTGCAGACAGAGATAGGGAAGAGCGGGGATGACGACTTAGGA AGCCATCAGCAGCAGTACACGAAACTGGCGATGAGAAGTTCGTTGAGCTCCATCAGAAACAACTTGAAAGAAGTTCAGAGGAACCTTGAGATCTGGTTGG CAAGAATCATTGGTGATCTGGAAGGGATTCTGGCAAGAGACGGGGCTTCGCGGGTTAGGGATTACTACACTTCTCGGTATCCTTTTAGTACTCAGTAA
AA sequence Show only first row Show all	>Lus10033275 pacid=23172246 polypeptide=Lus10033275 locus=Lus10033275.g ID=Lus10033275.BGIv1.0 annot-version=v1.0 MADEEPELAATATAEGAGGETTNNNRLISSYLGLSFSVFLALLPANALTLLPALQSRIRDLSLRLFQAEEQLKQMKSRRHEDSKANARVVEIFAGNRNAW RAEEKRLLQQIDAASEEAAVLRARIRDLEKEKEEWGVRVHDLEREVGEREEMLGFMSRSAAAGGGNGGGNDYYEEHEGRVEEGGEDAFGDNNRQWFASED EYLNGNGNGNFVYGGSFHHQNHHQHQQQQQQQELRYGGLGSEFAASASKFWPEGANSLWQQDGQHESIESHYHAKHFIARRESPWKVDGDSSGVSTKLKL LEQELLNLEKVGKGDLLKVPSLLRKQTKRYQALAGKIDDLCRRMQASDPCEPALSPEFRTQRQTEFLLEAFRLQQRASETEQKLMALQTEIGKSGDDDLG SHQQQYTKLAMRSSLSSIRNNLKEVQRNLEIWLARIIGDLEGILARDGASRVRDYYTSRYPFSTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	0	1
AT3G24150			unknown protein		Lus10019404 [exp]	1.0	0.8629
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	3.2	0.8602
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	5.7	0.8144
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	6.5	0.8001
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	7.1	0.7800
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	10.5	0.8128
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	11.7	0.7676
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	12.3	0.7709
					Lus10030985 [exp]	14.3	0.7534
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	16.2	0.8261

Compare expression of checked genes

Lus10033275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.