Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45410 315 / 3e-106 unknown protein AT4G25030 298 / 2e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034730 [exp] 530 / 0 AT4G25030 336 / 6e-115 unknown protein Lus10036513 [exp] 315 / 3e-106 AT4G25030 413 / 8e-145 unknown protein Lus10036514 [exp] 309 / 9e-104 AT4G25030 420 / 1e-147 unknown protein Lus10041414 [exp] 308 / 3e-103 AT4G25030 424 / 4e-149 unknown protein Lus10041415 [exp] 306 / 1e-102 AT4G25030 408 / 5e-143 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131300 [exp] 424 / 4e-149 AT5G45410 337 / 9e-115 unknown protein Potri.008G042100 [exp] 332 / 3e-112 AT4G25030 355 / 1e-121 unknown protein Potri.010G219900 [exp] 325 / 4e-110 AT4G25030 355 / 5e-122 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033276 pacid=23172178 polypeptide=Lus10033276 locus=Lus10033276.g ID=Lus10033276.BGIv1.0 annot-version=v1.0 ATGGACTCGCTGTTTAAAGGAATCGATGGCAATGCATCTGAATGCCACTTTGACGACAAAGCTATACAGAGATGCCCATTTTTGAGGAACATCAAGAAGC CAACAAGCTTCTCTTTCTCATCTGTGCATTTCCCTGGTCTTGGAACCAAGGGTCCGATATTTGAAGATGCTCCTAATTTTGACATGGCATTCAAGCTCTT TCATGGCAAAGATGGGGTTGTTCCACTCGCAAGCAGCTCTAATTATCATGATGATTTCCAGCATACTGAGCCAACTCCTCCCCAGTTCAACCCCTTAGCT GTGAAAGCGGCCACCATAAGCCTCTCTTCTTTTGGTCTAGGGGGACCTTTTGGCTTTGTTTCTATCAATGAAAAACGGAAGAAGCAGAAACCCAAATCTG ATTCAGCCAACAAGAGAGAACCATCGTCACAGGAAGGCAACGTGCCAAAGCACGAAGCAAACGGGAACGAATGGTTACAATCAGGAAACTGCCCGATTGC CAAATCATACAGAGCGGTTAGTCGTGTGCTCCCACTCGTGGCATCAACACTTCGGCCACCACCCGGGATGAAGCTCAGATGTCCACCAGCCGTGGTTGCT GCAAGGGCAGCGCTAGCCCGTACCGCCTTTGTGAAGACCATAAGACCTCAGCCATTACCAGCGAAAATGCTGGTGATTGCGATGCTAGGAATGGCAGCAA ACATTCCCCTGGGGATGTGGAAGGAACACACGCAGAAGTTCTCGATGTCATGGTTTGCCGCAGTTCATGCAGCAGTGCCTTTCATCGCCATGCTGAGGAA ATCGGTACTGATGCCTAAATCTGCCATGGCGCTGACCATCGGGGCTTCCATAATGGGCCAGGTGATCGGGTCGAGAGCCGAGAGACAGCGGCTGAAACTG AAAGCAACTTCTTCGTCTCAGGTCGCAATGAGATCAGAGACGCCGGTGAATGCGGATGTTGCAGGATATGATATTGGCATTGGCGGTTGTGGCAAAGGAG GAATAGAATGGGATCCGATGTTGAGTAAGAATAATGGTAGAACAACCTCATCGTCAGCCAACGCTTGCTGCTAA
AA sequence Show only first row Show all	>Lus10033276 pacid=23172178 polypeptide=Lus10033276 locus=Lus10033276.g ID=Lus10033276.BGIv1.0 annot-version=v1.0 MDSLFKGIDGNASECHFDDKAIQRCPFLRNIKKPTSFSFSSVHFPGLGTKGPIFEDAPNFDMAFKLFHGKDGVVPLASSSNYHDDFQHTEPTPPQFNPLA VKAATISLSSFGLGGPFGFVSINEKRKKQKPKSDSANKREPSSQEGNVPKHEANGNEWLQSGNCPIAKSYRAVSRVLPLVASTLRPPPGMKLRCPPAVVA ARAALARTAFVKTIRPQPLPAKMLVIAMLGMAANIPLGMWKEHTQKFSMSWFAAVHAAVPFIAMLRKSVLMPKSAMALTIGASIMGQVIGSRAERQRLKL KATSSSQVAMRSETPVNADVAGYDIGIGGCGKGGIEWDPMLSKNNGRTTSSSANACC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25030			unknown protein		Lus10033276 [exp]	0	1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	4.2	0.8487
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	7.9	0.8443
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029944 [exp]	10.7	0.7473
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	13.2	0.8481
					Lus10018551 [exp]	19.1	0.7641
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	19.4	0.8138
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	21.5	0.8085
AT5G03230			Protein of unknown function, D...		Lus10019936 [exp]	25.1	0.7170
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	26.2	0.8274
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	27.1	0.7534

Compare expression of checked genes

Lus10033276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.