Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31850 966 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 961 / 0 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G10440 519 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 511 / 3e-175 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 499 / 7e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 497 / 5e-170 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G18030 487 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 486 / 1e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G43200 465 / 8e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00740 461 / 2e-156 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034729 [exp] 1214 / 0 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10005764 [exp] 536 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 518 / 2e-178 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 515 / 2e-177 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 503 / 5e-172 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037180 [exp] 493 / 8e-169 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10017357 [exp] 491 / 2e-167 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 490 / 3e-167 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039385 [exp] 488 / 9e-167 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131400 [exp] 1051 / 0 AT1G31850 1026 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G102400 [exp] 1032 / 0 AT1G31850 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.015G139000 [exp] 529 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 527 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 526 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 516 / 3e-177 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 512 / 7e-176 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 507 / 3e-174 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 504 / 1e-172 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 494 / 4e-169 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033277 pacid=23172116 polypeptide=Lus10033277 locus=Lus10033277.g ID=Lus10033277.BGIv1.0 annot-version=v1.0 ATGAAGCATCACAAAGATGGGAAACCGGGATCCCCATACGATAGAAGTCCAAGGCTTGTTCCCATGGCCCTAACATGTGTGGTGCTTTGTGGACTCTCCT TCTACCTTGGTGGAATCTTCTTTTCTGAGAAAAACCAGATTGAGGCCAATAATGTGAAGGTTGCAACAATTGCATCACCTAAGGAAGCAGCCATTACGCC TCTTGAAGTCAAATCTTCGACTTTCGGGGAATGCAGTGCTAACTATCAAGATTACACTCCTTGTACAGATCCAAAGAGATGGAAGAAGTATGGTGTCCAC CGCCTTACCTTCATGGAGAGGCATTGCCCACCAGCATTTGAGAGGAAGGAGTGCTTAATTCCACCTCCTGATGGGTATAAGTCACCAATTAAGTGGCCCA AGAGCAGGGATCAATGTTGGTACAGGAATGTGCCATATGACTGGATCAACAAGCAGAAATCAAATCAGCATTGGCTGATAAAGGAAGGTGATAAGTTCCT TTTCCCTGGAGGAGGTACTATGTTCCCCAACGGTGTGGGTGAGTATGTTGACCACATGGTTGAGCTGATCCCAGAAATGAAGGATGGAACTATTCGGACC GCCATTGATACCGGTTGTGGGGTTGCTAGCTGGGGAGGTGATTTATTAGATCGTGGCATCTTAACTCTTTCTCTTGCTCCAAGAGACAATCACGAGGCTC AAGTACAGTTTGCTCTGGAACGTGGAATCCCTGCCATTCTGGGCATCATTTCTACACAACGTCTTCCCTTCCCTTCTAATTCTTTTGACATGGCACATTG CTCCAGATGCCTTATCCCATGGACTGAATTCGGGGGAGTCTATCTCTTAGAAGTTCACCGCATCCTACGTCCTGGAGGCTTCTGGGTGCTGTCTGGTCCT CCGGTTAACTATGAAAACCGGTGGAGAGGTTGGAACACAACAATTGAGGAGCAGAAGTCAGATTTCGAGAAGTTGCAGGACTTGCTAACTTCAATGTGCT TCAAATTGTACAATAAGAAGGGTGATATTGCTAAGCTTGCTAATCCTGATGTCTATCCACCCAAGTGTGATGACAGCATCGAACCAGATTCGGCTTGGTA CACCCCACTCCGACCCTGTGTTGTAGCTCCGGGGCCAAAGATAAAGAAGTCGGTTCTTGAATCGATCCCCAAATGGCCAGAGAGGTTGCAAGTTGCATCT GAGCGCATCTCAGATGTTCCTGGTGGGAGTGCTGCAACTTTCAAACATGACAATGGCAAATGGAAGGTGCGGGCTAAGCACTACAAGAAGTTGCTTCCTG CAATTGGCACTGACAAGATTAGGAATGTGATGGACATGAACACAGCTTATGGAGGGTTTGCAGCAGCTTTCGTCGACAGTCCTCTGTGGGTCATGAACGT CGTATCTTCTTATGCCCCAAATACACTTCCAGTGATCTACGACAGAGGGCTCATTGGAACTTACCACGATTGGTGCGAGGCATTCTCAACATATCCCAGG ACCTACGATCTTCTCCACGTTGATGGCCTCTTCACTGCCGAAAGCCAAAGGTGTGAGATGAAGCATGTGTTGCTGGAGATGGATAGGATAGTGCGGCCGA TGGGCTACGCAATGATCAGGGAATCGACCTACTACATAGATGCGATTGCAACGATTGCGAAGGGGATGAAATGGAGTTGCAGAAAGGAAGACACAGAGTA CGGAATCGAGAAGGAGAAGATATTGGTGTGCCAGAAGAAGCTCTGGTATTCCTCAAACCAGAGTTCATGA
AA sequence Show only first row Show all	>Lus10033277 pacid=23172116 polypeptide=Lus10033277 locus=Lus10033277.g ID=Lus10033277.BGIv1.0 annot-version=v1.0 MKHHKDGKPGSPYDRSPRLVPMALTCVVLCGLSFYLGGIFFSEKNQIEANNVKVATIASPKEAAITPLEVKSSTFGECSANYQDYTPCTDPKRWKKYGVH RLTFMERHCPPAFERKECLIPPPDGYKSPIKWPKSRDQCWYRNVPYDWINKQKSNQHWLIKEGDKFLFPGGGTMFPNGVGEYVDHMVELIPEMKDGTIRT AIDTGCGVASWGGDLLDRGILTLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGP PVNYENRWRGWNTTIEEQKSDFEKLQDLLTSMCFKLYNKKGDIAKLANPDVYPPKCDDSIEPDSAWYTPLRPCVVAPGPKIKKSVLESIPKWPERLQVAS ERISDVPGGSAATFKHDNGKWKVRAKHYKKLLPAIGTDKIRNVMDMNTAYGGFAAAFVDSPLWVMNVVSSYAPNTLPVIYDRGLIGTYHDWCEAFSTYPR TYDLLHVDGLFTAESQRCEMKHVLLEMDRIVRPMGYAMIRESTYYIDAIATIAKGMKWSCRKEDTEYGIEKEKILVCQKKLWYSSNQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	0	1
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	1.4	0.8470
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	2.8	0.8320
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	2.8	0.8424
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	3.9	0.8180
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	4.2	0.7982
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	4.6	0.8365
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	4.6	0.8036
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	9.8	0.7771
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	12.8	0.7932
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	13.7	0.7764

Compare expression of checked genes

Lus10033277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.