Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19110 620 / 0 Protein kinase superfamily protein (.1.2.3) AT5G45430 535 / 0 Protein kinase superfamily protein (.1.2) AT4G13020 382 / 2e-129 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT1G66750 212 / 4e-64 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT3G48750 206 / 2e-62 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G18040 207 / 6e-62 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 205 / 1e-60 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G59580 199 / 6e-59 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT5G63370 202 / 7e-59 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G71530 199 / 1e-57 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008303 [exp] 1006 / 0 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 585 / 0 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 388 / 4e-131 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10007921 [exp] 200 / 3e-59 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017371 [exp] 201 / 5e-59 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10040530 [exp] 200 / 9e-59 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10036384 [exp] 198 / 2e-58 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10010637 [exp] 197 / 5e-58 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10025986 [exp] 196 / 7e-58 AT2G18170 617 / 0.0 MAP kinase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101600 [exp] 692 / 0 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 500 / 5e-175 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 461 / 7e-161 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 460 / 2e-160 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.002G247500 [exp] 391 / 3e-132 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.001G035400 [exp] 303 / 5e-101 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.004G133500 [exp] 214 / 2e-65 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.015G092100 [exp] 208 / 4e-59 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G032100 [exp] 198 / 3e-58 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G231100 [exp] 197 / 4e-58 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033278 pacid=23172173 polypeptide=Lus10033278 locus=Lus10033278.g ID=Lus10033278.BGIv1.0 annot-version=v1.0 ATGTGGAACGGGGTTGGGGCTTCTCTGGCTCTACCAGACTTGGATCTAAACTGCTTTGTCCACTTGCATAAGACATGGAGCAAGTGCACATCTGTGGAAG GATTCTCCTCAACAGAGAGTACTGGAGGTGTGATGCAAAGTTTTTCTGAGATTGGTGGTCCATCTTTAGTGCCCTGGTTCAAGTACAAGCTAATCAAGGA AGTTGGTGATGGAACATTTGGGAGTGTCTGGCGAGCCCTCAGTAGACACTCTGGTGAAGTTGTTGCTATTAAAAAGATGAAGAGAAAGTATTATTCTTGG GAGGAATGTGTAAATCTCAGAGAAGTGAAGTCTCTGCGTAGGATGACTCATCCAAATATTGTGAAGCTCAAGGAAGTTATTCGAGAAAGTGATGTTCTGT ATTTCATCTTTGAGTACATGGAATTCAACCTTTACCAACTAATGAAGGACAGAGAAAAGCTATTCTCTGAAACTGAAATAAGGAACTGGTGTTTCCAAGT ATTCCAGGGTCTTGCTTATATGCATCAACGTGGATACTTTCATCGCGATTTGAAGCCAGAAAATTTGTTAGTTACTAAAGCTGTGATCAAGATTGCTGAT TTTGGTCTAGCACGGGAAATCAATTCACAACCACCATACACTGAATATGTCTCAACAAGATGGTACCGGGCCCCTGAGGTTCTTCTTCAGTCATCCCTAT ATGGTCCTAAAGTTGATATGTGGGCGATGGGTGCTATAATGGCAGAGCTTTTTAGTTTACGACCTCTTTTCCCTGGTACCAGTGAAGCAGATGAGATTCA CAGAATATGCAGTGTAATAGGAACTCCCACACTGGACACGTGGGCTGATGGTCTAAAACTTGCCTCCAGTATGCACTACCAATTTCCAGTGTTCCCTGGT GTGCATCTTTCAACAATGCTACCTTCAGCCAGTAATGATGCAGTTAAACTTATTACGTCTCTGTGTATGTGGGATCCTGACAAGAGGCCAACAGCTTCCG AGGTCCTTCAGCATCCTTTCTTCCAGAGCTGCTTCTATGTCCCACCATCTCTCCGCTCTAGGCCATCTGTTACTAGGACGCCTCCATCTGCTACAACAAA GGGTTCGATGGAGCAACAATGTGCCAGAAGATCCTCTTCAACTTTGCCTAGCTCAAAGATGGTCTACAATTCCACTTCTGGAAAGTTACATACTTCTTTG AGTACAGGTGTCCAGCGGAAACTTGATATGGTTAATCAGGATGAAAATAAGGATGACAAAACACCAAAGAATACTGCCAGGCAACAACCAAAATATCGTC CACCAGCAAGGAAAAGCCCTACTTCAACAATCAGGGGTCGAGCTACCAATGGGAACTCGGACATGGCAGATAAGTTTGGAAGCATGAGCATAGGGTCTCG AAAGCCGACCGTTGGGCAGACGGCTAGCACGAAGGCACCATCAATGAAGACAGGTGTGCAGTGGAATGCTGCAGCGAGCAGTGACTCGTTCCTGAGGTCT GCAAAACCATTCCAATCTGGGAGAAGTCTGACGAGAAAAGTTGCCGGATGA
AA sequence Show only first row Show all	>Lus10033278 pacid=23172173 polypeptide=Lus10033278 locus=Lus10033278.g ID=Lus10033278.BGIv1.0 annot-version=v1.0 MWNGVGASLALPDLDLNCFVHLHKTWSKCTSVEGFSSTESTGGVMQSFSEIGGPSLVPWFKYKLIKEVGDGTFGSVWRALSRHSGEVVAIKKMKRKYYSW EECVNLREVKSLRRMTHPNIVKLKEVIRESDVLYFIFEYMEFNLYQLMKDREKLFSETEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKAVIKIAD FGLAREINSQPPYTEYVSTRWYRAPEVLLQSSLYGPKVDMWAMGAIMAELFSLRPLFPGTSEADEIHRICSVIGTPTLDTWADGLKLASSMHYQFPVFPG VHLSTMLPSASNDAVKLITSLCMWDPDKRPTASEVLQHPFFQSCFYVPPSLRSRPSVTRTPPSATTKGSMEQQCARRSSSTLPSSKMVYNSTSGKLHTSL STGVQRKLDMVNQDENKDDKTPKNTARQQPKYRPPARKSPTSTIRGRATNGNSDMADKFGSMSIGSRKPTVGQTASTKAPSMKTGVQWNAAASSDSFLRS AKPFQSGRSLTRKVAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	0	1
AT3G48860			unknown protein		Lus10016721 [exp]	4.1	0.8792
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	8.0	0.8606
AT1G80910			Protein of unknown function (D...		Lus10034582 [exp]	8.9	0.8743
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	9.9	0.8627
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	10.0	0.8688
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	11.1	0.8289
AT5G55060			unknown protein		Lus10021546 [exp]	11.9	0.8725
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	12.1	0.8227
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	14.4	0.8423
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	15.8	0.8578

Compare expression of checked genes

Lus10033278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.