Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 60 / 8e-10 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G62380 59 / 2e-09 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT2G18060 56 / 2e-08 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT1G32770 55 / 4e-08 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT1G71930 55 / 4e-08 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT4G36160 55 / 4e-08 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G12260 54 / 8e-08 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G66300 54 / 9e-08 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT5G46590 52 / 2e-07 NAC ANAC096 NAC domain containing protein 96 (.1) AT3G10500 52 / 5e-07 NAC ANAC053 NAC domain containing protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022965 [exp] 499 / 1e-177 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033281 [exp] 403 / 7e-140 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10008240 [exp] 176 / 3e-51 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10004531 [exp] 175 / 6e-51 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10008200 [exp] 161 / 2e-47 ND 43 / 6e-05 Lus10007204 [exp] 155 / 3e-43 ND 43 / 2e-04 Lus10001309 [exp] 102 / 1e-24 ND / Lus10033676 [exp] 89 / 6e-19 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10025078 [exp] 88 / 1e-18 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 89 / 2e-19 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028700 [exp] 75 / 8e-15 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 73 / 8e-14 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G163600 [exp] 70 / 5e-13 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.019G063000 [exp] 68 / 7e-13 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G231300 [exp] 69 / 1e-12 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028300 [exp] 69 / 2e-12 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 67 / 2e-12 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 67 / 2e-12 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.001G220500 [exp] 62 / 2e-10 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10033279 pacid=23172199 polypeptide=Lus10033279 locus=Lus10033279.g ID=Lus10033279.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAACAAGTAGAACAACAGCCTCAACATCTCCAGATGCTCCCTCCGGGTTACCGTTTCAACCCATCTGAAGAAGAATTGGTAGGTTACCTTT TCAATCATATTTCCGGTTTCTCTTTGCAAAATATTCCGTTTTGCCCCGTTGTTGTCTGCGACTTGTACAGCTCCGCAGAACCATGGGAGATTTGGCCAAG GTGTCAATCGGAAAGATTCGGCCTCCCTATCGGTGATGTCTACGTGATCACCAAGCTCAATAAGTCCAAAACTTCTTCTACCAGATTCGACCGTTCCGTC GGAATCTCAGGGGGTACTTGGCATCAAACCAGTAAGGTTAAAAAAATGGAGGGGATTGATTGCGGTGCACAGAAACTGTGTGGGGTTTGTAAGGGATTCA ATTACAAAAATCTCACATCTCCGGAAAATGGCTGTTGGCTTTTGACGGAGTACACCATCAGCGTTGACGGTGGGAAGACCTACTCAGAGGAAGCTATATG CAAGCTTAACCATCACAAAACCAGTGAAGGGGCTGATCCTCAACCACCCACCACTGGCAAGAGAAAGTTTGATGCTGCTGCTGGCTGTTCCTCACAGCCA TCTTCAAAAGTTCCTAGAATCTGTGATGGTGCCCCAACTCTCTCTCCCGACTTGATATCATTATCTGCCTCAAATCATGGAGTTGGTTCTTCTTCATCTT CTTCTATGACCAACATTCACAATACGCTGCCAACAAATCAGTCTCACAACTCTGTGAATGAAGTAGGTTTCAATCTAGATGATAATATTTGGGCACTCCT TGAGGAAGAAATAGAACCCGACAGTACTGGACAGCAATCTCATAACTCTGAGAGTGAAGTAGGTTTCTATCTTGATGATGATGTTTTGGCACTCCTTGAG GAAGAAATAGAACATGGCAGTACTGGACAGCAAGTTCAGTCCCTTGTTGAACCAAATCAAGATCTCATATCCTTTTCATCTGATTCATCCTTGAACTCTA AGCTGCTCTTCAAATTAAGTGTCCGAGCTTTCGATCTTCCATCAACAATAGAAGCTGATGGTCGTGGCCAACAACATGACCTGACTGGGAATTGCATGCG ACTCCTTCCCAAGATGAAGAAACATGGGTTGTTGGATGTGGAAGTGCATAACCAACGGAGCTATCATATTTGA
AA sequence Show only first row Show all	>Lus10033279 pacid=23172199 polypeptide=Lus10033279 locus=Lus10033279.g ID=Lus10033279.BGIv1.0 annot-version=v1.0 MEEEQVEQQPQHLQMLPPGYRFNPSEEELVGYLFNHISGFSLQNIPFCPVVVCDLYSSAEPWEIWPRCQSERFGLPIGDVYVITKLNKSKTSSTRFDRSV GISGGTWHQTSKVKKMEGIDCGAQKLCGVCKGFNYKNLTSPENGCWLLTEYTISVDGGKTYSEEAICKLNHHKTSEGADPQPPTTGKRKFDAAAGCSSQP SSKVPRICDGAPTLSPDLISLSASNHGVGSSSSSSMTNIHNTLPTNQSHNSVNEVGFNLDDNIWALLEEEIEPDSTGQQSHNSESEVGFYLDDDVLALLE EEIEHGSTGQQVQSLVEPNQDLISFSSDSSLNSKLLFKLSVRAFDLPSTIEADGRGQQHDLTGNCMRLLPKMKKHGLLDVEVHNQRSYHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10033279 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	8.3	0.8740
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	11.3	0.8964
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	18.3	0.8460
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	19.2	0.8776
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10029470 [exp]	20.7	0.8466
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	21.2	0.8369
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	22.7	0.8490
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	28.2	0.8202
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	31.2	0.8514
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	32.0	0.8582

Compare expression of checked genes

Lus10033279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.