Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45275 71 / 6e-15 Major facilitator superfamily protein (.1) AT1G31470 65 / 8e-13 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 65 / 1e-12 Major facilitator superfamily protein (.1) AT4G19450 51 / 5e-08 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033270 [exp] 119 / 6e-35 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10034738 [exp] 119 / 9e-32 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10025123 [exp] 45 / 1e-05 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 45 / 1e-05 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10015470 [exp] 44 / 2e-05 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128200 [exp] 84 / 4e-19 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 79 / 2e-17 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 41 / 0.0002 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033280 pacid=23172210 polypeptide=Lus10033280 locus=Lus10033280.g ID=Lus10033280.BGIv1.0 annot-version=v1.0 ATGGCAAATTCGCGCCCCGGGGGATTTTTCGTACAGATCCTCAGAGGTAGAATGCAGCACAGAGAGAGAGTGGCCTACCTAGTGAAACTGTTAATCAGGT ATCAGGCTTCTTACGCTTCAACCAATACGAGAATGCCTGCTGATCAACTCAAGAGAGTCGCTGAGCGGCTTGTGATGGACAAGACAAATCATCATCATCA TCCTAGCAACGCACAAGGCCCTCTGAAGACTATGCTCGACAGAGACTTAATCGAATTAATCGCAATGTCCGGGTCCGGTAAGGGAGGCATTATGAACGTG GTGAACTCGGACTCGATAGTATGCATGGGGAAGGAGTGTTATTTCTTGACGTTTGTGTGGTGGGGGTGTCTGGCTATTGTCGGGTTGGCTTCTAGTATGC TGCTCTTCTTGAGGACGAGACATGCTTATGTCAGTTTGAACGGAAACGTGCTGTATCATCGCAGCTTCATTAGGATCTTACAGTAA
AA sequence Show only first row Show all	>Lus10033280 pacid=23172210 polypeptide=Lus10033280 locus=Lus10033280.g ID=Lus10033280.BGIv1.0 annot-version=v1.0 MANSRPGGFFVQILRGRMQHRERVAYLVKLLIRYQASYASTNTRMPADQLKRVAERLVMDKTNHHHHPSNAQGPLKTMLDRDLIELIAMSGSGKGGIMNV VNSDSIVCMGKECYFLTFVWWGCLAIVGLASSMLLFLRTRHAYVSLNGNVLYHRSFIRILQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45275			Major facilitator superfamily ...		Lus10033280 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	1.4	0.9651
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031270 [exp]	2.2	0.9477
AT2G24960			unknown protein		Lus10042421 [exp]	3.3	0.9664
AT2G04220			Plant protein of unknown funct...		Lus10032896 [exp]	4.1	0.9265
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	4.9	0.9376
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	7.3	0.9542
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10041597 [exp]	11.2	0.8593
					Lus10017955 [exp]	11.8	0.9491
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	12.4	0.9361
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	13.2	0.9390

Compare expression of checked genes

Lus10033280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.