Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 54 / 8e-08 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT1G71930 50 / 1e-06 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT5G66300 48 / 5e-06 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT5G62380 47 / 1e-05 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT2G18060 47 / 2e-05 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G46590 45 / 3e-05 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G36160 45 / 4e-05 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G32770 44 / 0.0001 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT4G17980 42 / 0.0004 NAC ANAC071 NAC domain containing protein 71 (.1) AT2G33480 41 / 0.0007 NAC ANAC041 NAC domain containing protein 41 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022965 [exp] 488 / 9e-174 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 400 / 6e-139 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10004531 [exp] 194 / 1e-58 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10008240 [exp] 171 / 6e-50 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10007204 [exp] 171 / 7e-50 ND 43 / 2e-04 Lus10008200 [exp] 154 / 5e-45 ND 43 / 6e-05 Lus10001309 [exp] 125 / 2e-33 ND / Lus10010074 [exp] 103 / 9e-24 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10034752 [exp] 75 / 4e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 73 / 2e-14 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.014G163600 [exp] 62 / 1e-10 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.015G002900 [exp] 60 / 9e-10 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G231300 [exp] 60 / 1e-09 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028700 [exp] 59 / 2e-09 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 58 / 4e-09 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 55 / 2e-08 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.017G058100 [exp] 55 / 3e-08 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G029200 [exp] 52 / 1e-07 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.019G083600 [exp] 50 / 1e-06 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10033281 pacid=23172196 polypeptide=Lus10033281 locus=Lus10033281.g ID=Lus10033281.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAACAAGTAGAACAACAGCCTCAACATCTCCAGATGCTCCCTCCGGGTTACCGTTTCAACCCGTCTGAAGAGGAATTGGTAGGTTACCTTT TCAATCATATTTCCGGTTTCTCTTTGCAAAATATTCTGTTTTGCCCCATTGTTGTCTGCGACTTGTATAGCTCCGTAGAACCATGGGAGATCTGGTCAAG GTGTCAATCGGAAAGATTCGGCCTCCCTATCGGTGATGTCTACGTGATCACCAAGCTCAAAAAGTCCAAAACTTGTTCTAAAAAGTCCGCAACTTGTTCT ACCAGATTTGACCGATTCATCGGAACCTCAGGGGCTACTTGGTTTCAAACCAATAAGGGTAAAGAACTGAAGGTTGATTGCGGTTTGCAGAAACTGAGTG GGCTTAGTAAGGGATTCAAGTATAAAAATCTCAAATCTCCGGAGAATGGCTGTTGGCTTTTGACGGAATACACCATCAGCTTTGACGATGGGAAGACCTA CTTGGAGGAAGCCATATGCAGGCTCAAGAACCATCATAAAACCAGTGAAGAAGGGGCTGATCCTGAACCACCCGCCACTGGCAAGAGAAAGTTTGATGCT GATGCTGGCTGTTCCTCACAGCAATCTTCAAAAGTTGCTAGAATCTGTGATGGTGCCCCAACAATCTCTCCTGATTTGATACCATCATCTGCCTCAGATG ATGGTGTTGGTTCTTCTTCTTCTATGCCAAACATTCACAATGCACTACTGCTGCCAACAGATCAGTCTCACAACTCTGAGGATGAGGTAGGTTTCTATCT TGATGATGATGTTTGGGCACTCCTTGAGGAAGAAATAGAACCTGACAGTACTGGACAGCAAAATCAGTCCCTCGTTGAACCAAATCAAGATCTGATATCC TTTTCGTCCGATTCATCCTTGAACTCTAAAGTACCTTTAATTGACGACAATTTCATTAACCGTCTTTCTAGCCCTAGTTACATTCCCTGCTCATTTGATT CTGATTTGGGTTATGAAAGTGACATGCTTTTTGCTTCACAAAACCTGCGTGGTAGTTCATTTTCTTATTTGCAAGATCTACCCTGA
AA sequence Show only first row Show all	>Lus10033281 pacid=23172196 polypeptide=Lus10033281 locus=Lus10033281.g ID=Lus10033281.BGIv1.0 annot-version=v1.0 MEEEQVEQQPQHLQMLPPGYRFNPSEEELVGYLFNHISGFSLQNILFCPIVVCDLYSSVEPWEIWSRCQSERFGLPIGDVYVITKLKKSKTCSKKSATCS TRFDRFIGTSGATWFQTNKGKELKVDCGLQKLSGLSKGFKYKNLKSPENGCWLLTEYTISFDDGKTYLEEAICRLKNHHKTSEEGADPEPPATGKRKFDA DAGCSSQQSSKVARICDGAPTISPDLIPSSASDDGVGSSSSMPNIHNALLLPTDQSHNSEDEVGFYLDDDVWALLEEEIEPDSTGQQNQSLVEPNQDLIS FSSDSSLNSKVPLIDDNFINRLSSPSYIPCSFDSDLGYESDMLFASQNLRGSSFSYLQDLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	0	1
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	4.7	0.8712
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	6.1	0.8194
AT3G16010			Pentatricopeptide repeat (PPR-...		Lus10011464 [exp]	13.1	0.8568
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	15.5	0.7630
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	16.1	0.8541
AT2G48060			unknown protein		Lus10000212 [exp]	16.5	0.7554
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10033279 [exp]	21.2	0.8369
AT1G68470			Exostosin family protein (.1)		Lus10005566 [exp]	24.4	0.8297
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10035308 [exp]	25.0	0.7858
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	28.4	0.8311

Compare expression of checked genes

Lus10033281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.