Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31650 614 / 0 ATROPGEF14, ROPGEF14 RHO guanyl-nucleotide exchange factor 14 (.1) AT5G02010 327 / 3e-105 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 324 / 3e-104 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT1G79860 313 / 4e-100 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT5G05940 313 / 3e-99 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G24620 306 / 3e-97 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G00460 300 / 2e-95 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT3G16130 301 / 4e-95 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT4G13240 298 / 2e-94 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT5G19560 293 / 7e-93 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034742 [exp] 1025 / 0 AT1G31650 634 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10037260 [exp] 733 / 0 AT1G31650 563 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10035676 [exp] 723 / 0 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10009874 [exp] 329 / 1e-105 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 323 / 2e-103 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 323 / 8e-103 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 322 / 1e-102 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021234 [exp] 317 / 3e-101 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 317 / 9e-101 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127300 [exp] 717 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.003G106400 [exp] 685 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.005G247100 [exp] 333 / 2e-107 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 332 / 8e-107 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 330 / 2e-105 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.004G179742 [exp] 328 / 4e-105 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.010G196000 [exp] 326 / 3e-104 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 326 / 6e-104 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 314 / 6e-101 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.016G104400 [exp] 318 / 8e-100 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10033282 pacid=23172092 polypeptide=Lus10033282 locus=Lus10033282.g ID=Lus10033282.BGIv1.0 annot-version=v1.0 ATGAGAAGCAAACTCGCTTGCTGCACCCGCGACAGAGGAATCAGCTTCGACTTCGACGAAGATGACAGGGTAATTACGTATGATGGACTGGAGAGTTGCA TTCAGAACAATAATAACCAGTCCTTTGAGAATGAGAGTGGGACTAGTAGAGGAGACGGATTCGTTAGCGATTCGTTTGATGAATGTGCGTCCAGCTGCTC ATCGAGCAAGGATGCGTTTGGGTCGTTTTCTTCTAAATGGATGAATGTGAAAAGAGATGACCAGAGCTTTGATGACTGCTGCTGGGACATCCCTGAAAGC CCACAGCACTTTTACGCCGAAGAGAAGCCGTCTTATGGAGTTGAGCTCTCAGATGTTGAGACGATGAAGGAGAAGTTTGCAAAGCTGTTGTTGGGTGAAG ATGTCACAGGTGGGACTAAGGGACTCACTGCTGCATTAGCATTGTCCAATGGTGTAACAAGTCTTGCAGCATCTGTGTTTGGGGAGCTATGGAAATTGGA GCCATTGCCTGAAGAGAGGAAGAACAAGTGGAGAAGGGAGATGGAGTGGTTACTTTCTCCTACCAATTATATGGTTGAGTTGGTTCCTGCTAAGCAACAT GGTGCCAATGGCAGGACAATGGAGATTATGACTCCGAGAGCCCGTGCAGACATCCACATGAATCTTCCTGCACTTAAGAATTTGACCTCGATGCTAATCG AGATATTGGATTCAATGGTGAAGAATGAGTTTTGGTACTCAGAAGTTGGGAGCAGAGCTGAAGGAAGAAACAAGAGCACAAGGCTGAGCAAGAGATGGTG GCTTCCGCTTCCGCAAGTTCCAACAGCCGGGCTCTCCGATTCGGAGAGGAAGAAGCTGGTCCAGAAATCAAGGGTTGTTTATCAAGTATTCAAAGCTGCC AAAGCCATCAATGATAGTGTTCTGCTTGAAATGCATGTCCCAACCATAATCAAAGATGCACTTCCCACGTCTGGGAGGGAGAATCTTGGGGAGGAACTGT ACAAGTTACTAACAATGGATTCAGCCACAATCGATGAGATAATTGATTCTCTGAATCTAAAATCTGAGCATAGAGTGATGGAAGTGGTGAACAAGTTGGA AGCGGCGATATTAGGATGGAAAGAGAGAATCAAAGCATCACAATCTGGAAAGAAATCCCCAATGAGAACATCTTGGACTTTTGCCAAGGACCCCATTTCT GAACTTGATAAGGTTGAGGGTCTTATAGACAAAGCTGAAGCAATGGTCCAGCAACTTAAGGCTACCCATCCAAACCTTCCTCAAACATTTCTTGATGCTA CCAAAATCCACTATGGCAAGGATGTAGGACATGCAATCTTGGAAGCATACTCCCGGGTTTTGGGAAACTTGGCATGCAGCATATTGACAAGGATAGGTGA CATTCTGCAAGAAGAAGTTCTGAGTAATCCAAATTCACCAGCAGCTGCTCATGTTATTAAGGGGGTGTTTGATATGTCATCCGGTGTTCATGGTATGAGA CTGCATCATGGAGAGTTTGATGAGAGGAACAAGGTGGAAGGAGGGAAGTTGCGGTATTCGGATGCCAGCAATTCGATTTCAGATTGGGAATTTTGCTATA GCGAACCAAAATCAAGCTCGTCTGCAAATGACACACCTAGCCGAAGCCGAGTATGGTGCATTGGAAGAGAGGCTTGTCTGAGCACTACATCACCTGGAAA CTCGCCATGA
AA sequence Show only first row Show all	>Lus10033282 pacid=23172092 polypeptide=Lus10033282 locus=Lus10033282.g ID=Lus10033282.BGIv1.0 annot-version=v1.0 MRSKLACCTRDRGISFDFDEDDRVITYDGLESCIQNNNNQSFENESGTSRGDGFVSDSFDECASSCSSSKDAFGSFSSKWMNVKRDDQSFDDCCWDIPES PQHFYAEEKPSYGVELSDVETMKEKFAKLLLGEDVTGGTKGLTAALALSNGVTSLAASVFGELWKLEPLPEERKNKWRREMEWLLSPTNYMVELVPAKQH GANGRTMEIMTPRARADIHMNLPALKNLTSMLIEILDSMVKNEFWYSEVGSRAEGRNKSTRLSKRWWLPLPQVPTAGLSDSERKKLVQKSRVVYQVFKAA KAINDSVLLEMHVPTIIKDALPTSGRENLGEELYKLLTMDSATIDEIIDSLNLKSEHRVMEVVNKLEAAILGWKERIKASQSGKKSPMRTSWTFAKDPIS ELDKVEGLIDKAEAMVQQLKATHPNLPQTFLDATKIHYGKDVGHAILEAYSRVLGNLACSILTRIGDILQEEVLSNPNSPAAAHVIKGVFDMSSGVHGMR LHHGEFDERNKVEGGKLRYSDASNSISDWEFCYSEPKSSSSANDTPSRSRVWCIGREACLSTTSPGNSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	0	1
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007675 [exp]	1.7	0.7688
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	8.5	0.6876
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	14.1	0.6878
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	14.5	0.6943
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	23.3	0.6780
					Lus10019504 [exp]	24.6	0.7132
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	31.6	0.7195
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10041381 [exp]	49.3	0.6039
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	49.7	0.6490
					Lus10017685 [exp]	49.9	0.6856

Compare expression of checked genes

Lus10033282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.