Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79450 427 / 3e-150 ALIS5 ALA-interacting subunit 5 (.1.2) AT3G12740 427 / 3e-150 ALIS1 ALA-interacting subunit 1 (.1) AT1G16360 421 / 2e-148 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT1G54320 419 / 4e-147 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT5G46150 347 / 5e-119 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034744 [exp] 656 / 0 AT3G12740 427 / 3e-150 ALA-interacting subunit 1 (.1) Lus10001762 [exp] 427 / 4e-150 AT1G54320 527 / 0.0 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10038516 [exp] 394 / 3e-137 AT5G46150 491 / 9e-176 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10023290 [exp] 390 / 9e-136 AT5G46150 482 / 3e-172 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10001834 [exp] 390 / 1e-135 AT1G54320 471 / 1e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139300 [exp] 472 / 5e-168 AT3G12740 437 / 5e-154 ALA-interacting subunit 1 (.1) Potri.004G081100 [exp] 459 / 1e-162 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.008G082100 [exp] 413 / 8e-145 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.010G173900 [exp] 413 / 1e-144 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.001G381500 [exp] 394 / 4e-137 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2) Potri.011G082100 [exp] 371 / 1e-128 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Potri.001G337466 [exp] 49 / 1e-07 AT1G16360 50 / 7e-09 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Potri.001G410100 [exp] 42 / 0.0005 AT5G54540 121 / 4e-32 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [flax] [poplar] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Lus10033283 pacid=23172157 polypeptide=Lus10033283 locus=Lus10033283.g ID=Lus10033283.BGIv1.0 annot-version=v1.0 ATGGAAAGCAAAGAGACACATGGGTCCGTTGGTGGTGCAAGCACCTCCTCCTCCTCCTCTTCCTCCTCCAAGAAAAAGCAATCCAAGAGACCTAAATATT CTAGGTTTTCGCAGCAGGAACTTCCGGCATCTAAATTCATTATAACACCAACGGTGGTCATTTCGACATTTGTTGCAATCGCCATTGTGTTCATCCCACT CGGACTTGCTTCCTTATTTGCATCAGACCATGTTGTCGAGATAATGCATCGGTATGATAATCTCTGTCTTCCTGATACTTCAAATGCTGTGAAACACATC CAGAGCAAAGAAACCAACAAAACTTGCGCTGACAAATTAACTGTCTCTAAGGAAATGAAGGGTCCAATCTTTATCTATTACCAGCTCGATAATTTCTATC AGAATCACCGCCGATATGTGAAGAGTCGAAGCGACAAACAATTGAAGAGCAAAGCAAGTGCGAGAGACACTAAAAGCTGTGCTCCGGAGGCTAACACTGA CAAAGGCCCCATTGTTCCTTGTGGACTTGTTGCTTGGAGTCTTTTCAACGACACTTACAAATTCGTTGTTAAGAACAAAGCTTTAGATGTCAACAAGAAG AACATCGCATGGGATAGTGACAAGAGTCACAAGTTTGGGTCCGATGTTTACCCTCAGAATTTTCAGAGTGGAGGCCTCATTGGTGGCGGGAAACTAGAAC CAAGCAAACCGCTGAGCGAGCAAGAAGATTTGATTGTATGGATGCGAACGGCTGCATTGCCGACATTTCGAAAACTATACGGAAGAATCGAGGGTGACCT CCAAGTGAACGATAATATTGAGCTTGTGGTAGAGAATAACTATAATACATATAGCTATGGAGGTAAAAAATGGCTCATATTGTCGACAACAAGTTGGATA GGAGGAAAGAATGAGTTTCTTGGGATTGCATACTTGACCATTGGTGGTTTATGCTTGTTCTTGGCGGTCACCTTCATACTTATCTATGTGCTTAGGCCAA GGCAACTTGGGGATCCGTCTTACTTGTCGTGGAATAAGCAACCACGAGAGCCATGA
AA sequence Show only first row Show all	>Lus10033283 pacid=23172157 polypeptide=Lus10033283 locus=Lus10033283.g ID=Lus10033283.BGIv1.0 annot-version=v1.0 MESKETHGSVGGASTSSSSSSSSKKKQSKRPKYSRFSQQELPASKFIITPTVVISTFVAIAIVFIPLGLASLFASDHVVEIMHRYDNLCLPDTSNAVKHI QSKETNKTCADKLTVSKEMKGPIFIYYQLDNFYQNHRRYVKSRSDKQLKSKASARDTKSCAPEANTDKGPIVPCGLVAWSLFNDTYKFVVKNKALDVNKK NIAWDSDKSHKFGSDVYPQNFQSGGLIGGGKLEPSKPLSEQEDLIVWMRTAALPTFRKLYGRIEGDLQVNDNIELVVENNYNTYSYGGKKWLILSTTSWI GGKNEFLGIAYLTIGGLCLFLAVTFILIYVLRPRQLGDPSYLSWNKQPREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	0	1
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	2.2	0.9762
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	2.4	0.9706
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	3.5	0.9618
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	3.9	0.9565
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	4.9	0.9587
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	6.7	0.9441
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	6.9	0.9483
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	7.2	0.9193
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	8.0	0.9449
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	8.4	0.9470

Compare expression of checked genes

Lus10033283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.