Plant FIBer expression Database

Lus10033285 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35612 42 / 1e-05 unknown protein
AT5G66816 37 / 0.0008 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034745
[exp]
78 / 4e-19 AT2G35612 45 / 6e-07 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G234800
[exp]
54 / 2e-10 AT2G35612 64 / 6e-15 unknown protein
Potri.014G034500
[exp]
37 / 0.0008 AT5G66815 43 / 1e-06 unknown protein
Potri.007G041400
[exp]
37 / 0.0009 AT2G23440 45 / 2e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10033285 pacid=23172099 polypeptide=Lus10033285 locus=Lus10033285.g ID=Lus10033285.BGIv1.0 annot-version=v1.0
ATGCATTTTGGACAACCTCTTCAACCCATTTCCCCCCACTACAAAGCTAAATTTCTAATTAATCTTCCCATATTAGAGAGATCAATTAAGTTGGTCAATA
CCCCCATGCATCTTATGACGATGGTGATGATGGAAGTTCACCATCTCCATCACAACACAACCACTACTAGTACTCTTCTCCTTTTGCTTCTCCTTACAGT
CTCAACTACAACAGCAACTGGTAGACCACTTATAAACAACAACCACCATGATGAGCAGCATCAACATCCTCCTCCTCTGCCACCGCCTCCCGGAGCTCCA
GGAGGTGGCTGTTTGACTCCTCCGATGCCACGGGGGCCACCGGCTCCAATAAGGGTTGGATTGGGGTACCGTTACAAAGTGATGGAGGAAGATGCTTTCA
GACCAACATCTCCTGGTCATAGCCCTGGCGTTGGTCATAATAGCCCCCCTACTGCTCCATGA
AA sequence
>Lus10033285 pacid=23172099 polypeptide=Lus10033285 locus=Lus10033285.g ID=Lus10033285.BGIv1.0 annot-version=v1.0
MHFGQPLQPISPHYKAKFLINLPILERSIKLVNTPMHLMTMVMMEVHHLHHNTTTTSTLLLLLLLTVSTTTATGRPLINNNHHDEQHQHPPPLPPPPGAP
GGGCLTPPMPRGPPAPIRVGLGYRYKVMEEDAFRPTSPGHSPGVGHNSPPTAP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35612 unknown protein Lus10033285
[exp]
0 1
AT5G52020 AP2_ERF Integrase-type DNA-binding sup... Lus10027415
[exp]
6.0 0.8127
AT5G59730 ATEXO70H7 exocyst subunit exo70 family p... Lus10040872
[exp]
8.8 0.8128
AT3G53810 Concanavalin A-like lectin pro... Lus10016507
[exp]
14.3 0.8049
AT4G21200 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELL... Lus10018372
[exp]
15.2 0.7729
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Lus10029167
[exp]
16.1 0.7046
Lus10011342
[exp]
21.5 0.7877
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Lus10019774
[exp]
22.7 0.7972
AT2G17270 PHT3;3 phosphate transporter 3;3 (.1) Lus10026554
[exp]
25.8 0.7816
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Lus10002985
[exp]
28.1 0.7626
AT4G36870 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodom... Lus10016790
[exp]
30.5 0.7695

Lus10033285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.