Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19370 104 / 6e-28 Protein of unknown function (DUF1218) (.1) AT1G31720 92 / 3e-23 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034746 [exp] 184 / 1e-59 AT1G31720 103 / 7e-28 Protein of unknown function (DUF1218) (.1) Lus10035672 [exp] 125 / 6e-36 AT4G19370 104 / 9e-28 Protein of unknown function (DUF1218) (.1) Lus10037256 [exp] 118 / 5e-33 AT1G31720 94 / 2e-23 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 39 / 0.0007 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235000 [exp] 151 / 6e-47 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 45 / 4e-06 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218) PF11309 [flax] [poplar] DUF3112 Protein of unknown function (DUF3112)
Representative CDS sequence Show only first row Show all	>Lus10033286 pacid=23172236 polypeptide=Lus10033286 locus=Lus10033286.g ID=Lus10033286.BGIv1.0 annot-version=v1.0 ATGGAGAACCATAGAACCGGATTGCTCGCCGTCGTCATCTCCCTGTTCCTCGTCTCCTTCGCTTGCTGCATCATCGCCGAAACCAAGAAAGTCAAGAAGG AGGATGCGAAACTGCACAACCAGATGTGTGGCATGCCGCAGAGCCACGCATTCGGGTTCGGAGTAGCGGCGTTAGTCTGCCTGGTAATCGCACAGACGGT GAGCACCTTCGCCGTCTGCAGCGCCCTCTCATCATCCTCCACCGCTAAGAACAAAAGGAAACCGAGGACGATCTTGTCCTTTCTCTTGCTTCTTCTATCC TGGGTGAGTTTTGGGGTGGCGGTGGTGCTGTTGGCTGGGGCAACTAGCATGAGCACAATGCAGGCGTATGGAGAAGGATGGCTGGACGACAAGTGCTACG TAGTGAAAGATGGAATCTACGCTATATCAGGGGTTTTGTCGTTGGTTTCCGCAGCCGCTGCCATTGCCTCCACCTTCAGAAAAGATCAGTATGAACATCA AGGTCGTAGATTACATGAACAGGCTGCTTACTCCCTGACTTTTTAA
AA sequence Show only first row Show all	>Lus10033286 pacid=23172236 polypeptide=Lus10033286 locus=Lus10033286.g ID=Lus10033286.BGIv1.0 annot-version=v1.0 MENHRTGLLAVVISLFLVSFACCIIAETKKVKKEDAKLHNQMCGMPQSHAFGFGVAALVCLVIAQTVSTFAVCSALSSSSTAKNKRKPRTILSFLLLLLS WVSFGVAVVLLAGATSMSTMQAYGEGWLDDKCYVVKDGIYAISGVLSLVSAAAAIASTFRKDQYEHQGRRLHEQAAYSLTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19370			Protein of unknown function (D...		Lus10033286 [exp]	0	1
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	8.1	0.7948
					Lus10003479 [exp]	97.8	0.7432
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	110.6	0.7620
AT3G15760			unknown protein		Lus10043269 [exp]	148.8	0.7352
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	174.9	0.7492
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	202.4	0.7201
AT3G50120			Plant protein of unknown funct...		Lus10006802 [exp]	219.8	0.7287
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10015704 [exp]	256.2	0.7224
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028198 [exp]	282.1	0.7130

Compare expression of checked genes

Lus10033286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.