Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45330 137 / 2e-34 DCP5-L decapping 5-like (.1) AT1G26110 134 / 2e-33 DCP5 decapping 5 (.1.2) AT4G19360 93 / 6e-22 SCD6 protein-related (.1.2) AT4G19340 55 / 3e-08 SCD6 protein-related (.1) AT4G19260 55 / 4e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19330 55 / 1e-07 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034747 [exp] 722 / 0 AT1G26110 229 / 5e-68 decapping 5 (.1.2) Lus10035052 [exp] 134 / 4e-33 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10017884 [exp] 133 / 7e-33 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10017885 [exp] 132 / 1e-32 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10035051 [exp] 120 / 1e-28 AT1G26110 297 / 1e-92 decapping 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235100 [exp] 167 / 4e-45 AT5G45330 229 / 7e-68 decapping 5-like (.1) Potri.008G114900 [exp] 138 / 1e-34 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.017G111500 [exp] 137 / 1e-34 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G104000 [exp] 136 / 5e-34 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.010G131400 [exp] 132 / 1e-32 AT1G26110 494 / 1e-168 decapping 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [flax] [poplar] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Lus10033287 pacid=23172249 polypeptide=Lus10033287 locus=Lus10033287.g ID=Lus10033287.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGCCGCCGTCATCATCGCCGGCGTTGCAGCCATCTTCTTCTGATTCCCCTCCTGTTTCCGCTCCTTCTTCGTCATCGGCACCAGGATCGT CGAATGTGATCGATTCTTACCTAGGAAGCCACATTAGTCTCATTTCCAAGTTTGAAATTCGCTATGAAGGTGTCCTCTATCGCCTCGACGTTCAGGATTC CACGCTTGCCCTAAAAGATGTCAGGTCATATGGAACGGAGGGTCGAAAGAAAGATGGCCCACAAGTTCCTGCGAGTGAGAAGGTGTATGATTTCATTCTA TTTCGTGGGAGTGATATTAAGGATTTACAAGTGAAGTCCCCACCTCCTGCTCCAACTTCCGAGCAAATATATGAAGACCCTGCCATTATCCAGTCACAGT ATGTTAGTGCCCCTTCAAGTTCATCATCAGCTTCAATTGCTCGGAAGACTAGCATGGAATCAAGTCAAGTACCGAATGCACCTGCACCAACAGTTGGAGC CCATTCTGCTGCATTGCCTTCACATCCGCCTGAGATTTACCAATCAAATCTTTCTCAAGCAACACAGACTGTTAGTCAACCTTTGTCGTCACAGATGTAT TGGCAAGGATATAGTGGAAATCCATTCAGTGGGCCTGCTCCTGCTCATCCACGGAGCCCTTTCAATCCTTCATCTACTGCTCCATCTTCCTTCCCAATGC AAAATCAAGTGCTGGCTCCTGGACCGGGTGATTCTCCAGTAAAGGGATTATGGCATACATCAGAAGCGCCATCTAATGCCTCAAATGCCGCAAATTCTAG TTTCTCGCATTCTCTTATTCCACCAGGAAGTTCTTCATCTCCTTTGATTCCACCCTCAGCATTCACAATTGCACCTCAAGTACCTTTTTCCGCCTATGGA ATTTCTGGTGGAGGAGATCTAAAGACTGGTACAAATCAAAATGTTAGCAGTGCTGAGTCTAACCATGTAGGGATGCCTCCTTTCCAGCCCATGCCTTATT CTGCTTCCTCTCAAGTGTCTACTTCCAATCCCTTGATATCACAACTTCCGTACCCCTCGAATTTGAATCAGTTTTCACAGTCTTCCCTTTTTCCTATGCA AAGTATGTTCTCTACACAGAATAGCATGATGCTGACCCCACTGTCATCGGCATCCTCGTCCTTGATTTCTACTGCAGCTTCTCAAGCTCCATTATTGCCA TTGCCGAGCTCGACACAGATCATGTTCTCTGAAGAATTTGATTTTGAAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTGTGGGGTCATATGGGAAAGG CAAAGCCAAATAATGAAGCAGACGGTCTCGAGGGCAATGCATTGCAACAAAATGTAGCTCCTCACTTGCCAAACAATTTTGATCCTCAGCCTGCATACAA GAAAGACGACTTCTTTGACACAATTTCTTGTCATTCACGCGGCAGGGGAAGGAATGGGCAGTTTAGGTTTTCTGATCGAATGAGGCACGATACTGAGACA TTCGGCAGCTTTGATCAGAGACCTAACATGGGATACGGACGCTACAGTGGCCCTGGACGTGGCTATAATAACTACAGTGGTTCACAAAACTGGGGAAGGG GGTATGGCTATGGTGGCAGAGGGCAAGGGAACATGCATTTATGA
AA sequence Show only first row Show all	>Lus10033287 pacid=23172249 polypeptide=Lus10033287 locus=Lus10033287.g ID=Lus10033287.BGIv1.0 annot-version=v1.0 MASSPPSSSPALQPSSSDSPPVSAPSSSSAPGSSNVIDSYLGSHISLISKFEIRYEGVLYRLDVQDSTLALKDVRSYGTEGRKKDGPQVPASEKVYDFIL FRGSDIKDLQVKSPPPAPTSEQIYEDPAIIQSQYVSAPSSSSSASIARKTSMESSQVPNAPAPTVGAHSAALPSHPPEIYQSNLSQATQTVSQPLSSQMY WQGYSGNPFSGPAPAHPRSPFNPSSTAPSSFPMQNQVLAPGPGDSPVKGLWHTSEAPSNASNAANSSFSHSLIPPGSSSSPLIPPSAFTIAPQVPFSAYG ISGGGDLKTGTNQNVSSAESNHVGMPPFQPMPYSASSQVSTSNPLISQLPYPSNLNQFSQSSLFPMQSMFSTQNSMMLTPLSSASSSLISTAASQAPLLP LPSSTQIMFSEEFDFEAMNEKFKKDEVWGHMGKAKPNNEADGLEGNALQQNVAPHLPNNFDPQPAYKKDDFFDTISCHSRGRGRNGQFRFSDRMRHDTET FGSFDQRPNMGYGRYSGPGRGYNNYSGSQNWGRGYGYGGRGQGNMHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10033287 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	3.7	0.9240
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	4.6	0.9144
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	6.3	0.9164
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	12.8	0.8971
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	13.9	0.8672
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	17.0	0.8897
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	18.0	0.9007
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	19.2	0.8595
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	22.7	0.8837
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	23.0	0.8698

Compare expression of checked genes

Lus10033287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.