Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31350 248 / 1e-78 KUF1 KAR-UP F-box 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034748 [exp] 236 / 9e-77 AT1G31350 169 / 2e-51 KAR-UP F-box 1 (.1) Lus10042824 [exp] 48 / 1e-05 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 45 / 6e-05 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 43 / 0.0004 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 42 / 0.0006 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 42 / 0.0008 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G230600 [exp] 303 / 4e-100 AT1G31350 352 / 2e-119 KAR-UP F-box 1 (.1) Potri.009G024000 [exp] 297 / 1e-97 AT1G31350 330 / 1e-110 KAR-UP F-box 1 (.1) Potri.019G044000 [exp] 238 / 7e-75 AT1G31350 277 / 3e-90 KAR-UP F-box 1 (.1) Potri.006G193800 [exp] 48 / 7e-06 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 42 / 0.0007 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033288 pacid=23172059 polypeptide=Lus10033288 locus=Lus10033288.g ID=Lus10033288.BGIv1.0 annot-version=v1.0 ATGCCCGATTCCATTTCTCCCGTCCCCATGAAACGGCATCCCAAACGGCGGCCGGGAAATCACCACCTACAGGCTGACCAGCAGCAGCAGCCGTCTCTAA TTCCCGGCCTCCCGGACCACCTCGCCCAACTCTGCCTCTCATCCCTGCCTCCTCCGCTTCTCTTCTCCGTCTCCAATTCATGGCGTAGCCTCCTCTATTC CCCTTCCTTCCCTCCTTTCCTCTCTATCTACGCCCTCCTCTCCTCCTCCGACGGCAACTCCATCCACTTCTCCTCCTTCGATCCCCTCTCCTCCAGCTGG GATCCACTTCCTCCTCCGCCGCCGCTCCACCCTCCCCTCCGCCTCCTCCTCCGCCACCCATCCTTCATCTCCCGACACCTCCCCATCCAGTCCCTCTCAG TCTCTGGTCGCCTCCTCCTCCTCGCCGCCACCACCGACAACCTCTTCCCCGCCCTCTCCCGTCCTTTGGTCTTCGATCCCAATTCCCGCTCATGGTCCTC TGGCCCTCAGCTCTCTGCTCCACGCCGATGGTGCGCTGCCGGGACCTCCAACGGCGCTGTCTACGTCGCCAGCGGAATCGGAACTCAATTCTCCCCCGAC GTCGCCAAGTCTGTGGAGAAGTGGAATTTAATTGAATCGAATGGTAGTCAACATTTGGGGGAAATCAAAATTACTTCTCCCCCGAATTGGAAGTGGGAGA AGGTGAAGGGGATGAAGGACGGGAGATTCTGCAGAGAAGCGATCGACGCTGTTGGGTGGAAAGGGAAGCTGTGTATGGTGAACGTGAAGGGGAATTCGGC GGCGAAGGAAGGCGCGGTTTACAACGTCCGTCGGAACTCGTGGGAGGAGATGCCGCCCGGGATGATCGGAGGGTGGAAAGGTCCGGTGGCGGCGATGGAA GAGGAGGTAATGTACGTGGTGGACGAAGCGGAAGGGGCGGTGAGAAGGTATGTGGCGGAGACGGATGGTTGGGAAGAGGTGGTGGTGTCTCCGTTGATGA GGGGCGCTGAGCAAGTTGCCGCCGGTGGAGGTAGGGTGTGCGTTGTTTGCGGCGGCGGCGGTGGTGGGATTGTGGTAGTTGATGTGGTGACGGAGCCGGC GAGGATTTGGGTGGTTGACTTGCCGAATGGGTTTGATTCTGCCGTCGCTGTTCATGTACTGCCAAGGATGAGCCGGCCGGAAATAGCTTTCCCTTTAGCT TCTTCCGGCTCTCCTCCTTGTGCCTTCATGTCTACGGATTAA
AA sequence Show only first row Show all	>Lus10033288 pacid=23172059 polypeptide=Lus10033288 locus=Lus10033288.g ID=Lus10033288.BGIv1.0 annot-version=v1.0 MPDSISPVPMKRHPKRRPGNHHLQADQQQQPSLIPGLPDHLAQLCLSSLPPPLLFSVSNSWRSLLYSPSFPPFLSIYALLSSSDGNSIHFSSFDPLSSSW DPLPPPPPLHPPLRLLLRHPSFISRHLPIQSLSVSGRLLLLAATTDNLFPALSRPLVFDPNSRSWSSGPQLSAPRRWCAAGTSNGAVYVASGIGTQFSPD VAKSVEKWNLIESNGSQHLGEIKITSPPNWKWEKVKGMKDGRFCREAIDAVGWKGKLCMVNVKGNSAAKEGAVYNVRRNSWEEMPPGMIGGWKGPVAAME EEVMYVVDEAEGAVRRYVAETDGWEEVVVSPLMRGAEQVAAGGGRVCVVCGGGGGGIVVVDVVTEPARIWVVDLPNGFDSAVAVHVLPRMSRPEIAFPLA SSGSPPCAFMSTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	3.0	0.8133
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	3.7	0.8223
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	5.5	0.7975
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	5.9	0.8538
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	10.2	0.8083
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	16.0	0.7917
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	16.4	0.8075
AT5G64230			unknown protein		Lus10010617 [exp]	20.2	0.7753
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	20.4	0.7400
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	22.4	0.7684

Compare expression of checked genes

Lus10033288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.